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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagcaactctcttagagtcatgctcatctaataatgttatgcccatgttaaggtcatagcagcctaggaatcattgttctcctaccttctcttcttaccaaagcgtgtaacctttctgtgctttattttttatttttcattttcaagaatttgtattctcatggtgtggaatgattccag

Basic information

species Vitis vinifera
transcript Vv16s0039g02760.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G28990.1 (Glycine max), 5'ss of exon 3
ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagcaactctcttagagtcatgctcatctaataatgttatgcccatgt-taaggtcatagcagcctaggaatcattgttctcctaccttctcttcttaccaaagcgtgtaacctttctgtgctttattttttatttttcattttcaagaatttgtattctcatggtgtggaatgattccag
|||||||||| ||||| || ||||| |||||||| |||||||| ||||| || || ||||||||||||||||  || || || || ||||| || ||||||||   |   | | | |     | || |||||   |||| | |  |      || ||  ||     |  |  |   ||     |  |   ||    |                                                                                   
ATTTGGCTCAGAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatgtaatacaattatactccggcactgagttatttcaattaggttaaaaggattaaaaaatttagactaggga-----------------------------------------------------------------------------------

upper sequence: Vv16s0039g02760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G38750.2 (Glycine max), 5'ss of exon 4
ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagcaactctcttagagtcatgctcatctaataatgttatgcccatgttaaggtcatagcagcctaggaatcattgttctcctaccttctcttcttaccaaagcgtgtaacctttctgtgctttattttttatttttcattttcaagaatttgtattctcatggtgtggaatgattccag
||||||| |||||||| || ||||| |||||||| |||||||| ||||| || || ||||||||||||||||  || || || || ||||| || ||||||||   |   | | | |     | ||  |||| | || |  |         || ||  ||     || |      |     |     ||     |||                                                                                  
ATTTGGCCCAAAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatggaatactattctatctggcactgagtaatttcaattagggtaaaggattaaaaatttaggctagggatac----------------------------------------------------------------------------------

upper sequence: Vv16s0039g02760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G19910.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagc--aactctcttagagtcatgctcatctaataatgttatgcccatgttaaggtcatagcagcctaggaatcattgttctcctaccttctcttcttaccaaagcgtgtaacctttctgtgctttattttttatttttcattttcaagaatttgtattctcatggtgtggaatgattccag
|  |||| || ||||| ||||||||||||||||| || ||||| |||||||| || |||||||| ||||| | |||||||||||| || ||||| |||||||    | | |||||  |   ||    | || |  |||   | |  ||| |||||      |   ||    || ||| | |||||  ||||  |   |                                                                                   
ACCTGGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTCATTATgtaagttggaatatcttatggaattg---gtgtagtcttgtagagtct-tgtgaaggtttggataatata----tctttggtttcctatgttcttgttacag----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383073|gb|EC947422.1|EC947422
EST:     TTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT                         GTATCCACATTGCC-NNNNNNNCTTGAACTTCTTCAGAATGCAAACTTCCG
genomic: TTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagcaact ... atgattccagGTATCCACATTGCCTTTTTTTTCTTGAACTTCTTCAGAATGCAAACTTCCG