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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGGCATGGATTTTCGACGAGTACTCAAAATTCCATGGTCACTCACCGGCTGTAGTGACTGGAAAGCCAATAgtaagtatttgcgacaaaaaaccgagcatctatgatttagatttgtgtaaacctttgaagttgagaaacgaatttgtaactgttgtttcttgttctgtggcctcatttacatttgggcttttag

Basic information

species Vitis vinifera
transcript Vv16s0039g02720.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g45970.1 (Oryza sativa), 5'ss of exon 4
ACTATGGCATGGATTTTCGACGAGTACTCAAAATTCCATGGTCACTCACCGGCTGTAGTGACTGGAAAGCCAATAgtaagtatttgcgacaaaaaaccgagcatctatgatttagatttgtgtaaacctttgaagttgagaaacgaatttgtaactgttgtttcttgttctgtggcctcatttacatttgggcttttag
|| ||||| |||||||| || |||||||| |||||||||||||| |||||||| || || ||||| |||||||||||||||||     |||| ||  | |  |||||   |||   | |   |||   |||  |       |  | |||| |   | || ||| ||||                               
ACCATGGCTTGGATTTTGGATGAGTACTCGAAATTCCATGGTCATTCACCGGCAGTTGTCACTGGGAAGCCAATAGTAAgtatactatacaacaacacaa--atcta--gtttg--tgtaaataacaatttacatccagtgattgtattt-tgnatatt-tttgttgtag-----------------------------

upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G427097_T01 (Zea mays), 5'ss of exon 4
ACTATGGCATGGATTTTCGACGAGTACTCAAAATTCCATGGTCACTCACCGGCTGTAGTGACTGGAAAGCCAATAgtaagt----atttgcgacaaaaaaccgagcatctatgatttagatttgtgtaaacctttgaagttgagaaacgaatttgtaactgttgtttcttgttctgtggcctcatttacatttgggcttttag
|| |||||||||||  | || |||||||| ||||| ||||||||||| || || || || ||||| |||||||||||||||    |  || | ||  ||    |     |   | | |  ||| |   ||  | | |  |     ||  ||| |  |     |  || || |  | |   ||| |||   ||||   || |||
ACCATGGCATGGATGCTGGATGAGTACTCGAAATTTCATGGTCACTCCCCAGCAGTCGTCACTGGGAAGCCAATAgtaagtgaaaaaatgtggcagcaagttaaattggtgccaataaacttttttacaaagtataatataacagaaaaaatgtaca--caatagttattatcatttttactcttttttgtttgttgttgtag

upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S62_236V6.1 (Physcomitrella patens), 5'ss of exon 5
ACTATGGCATGGATTTTCGACGAGTACTCAAAATTCCATGGTCACTCACCGGCTGTAGTGACTGGAAAGCCAATAgtaagt----atttgcgacaaaaaaccgagcatctatgatttagatttgtgtaaacctttgaagttgagaaacgaatttgtaactgttgtttcttgttctgtggcctcatttacatttgggcttttag
|||||||| |||||||| ||||||||||| ||||| |||||  |  | ||||| || || ||||| || ||  | ||||||     | | | || |||||| | | |    | |       ||||  | |  ||||||  |||  | |   |||   ||  ||| | ||| |  | |    ||||  |               
ACTATGGCTTGGATTTTGGACGAGTACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaatgtctcctaccaaaaactgtgtacagcttaaccg--cttgttcagatgtttgaa--tgactatccc-tttcctacgattgatccttttcttttactttcatgaag--------------