Sequence
atgc intronic sequence ATGC exonic sequenceTGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaaggtcacataatctggctgtatgctagctcttaactcatagctttttctgaatcatacttaatccggtttttctgaatcatacttaattac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g31260.1 (Oryza sativa), 5'ss of exon 4
TGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaaggtcacataatctggctgtatgctagctcttaactcatagctttttctgaatcatacttaatccggtttttctgaatcatacttaattac
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TGTGCATATAATTCTGCAAAGTCTAAGAACAGATTTCACTTTTGGGGAAGCCATTGGAGGCATGGAGATGCATTACTTTTTTCACTTGCGTCTGCCCAGgtaacaagatga--agttgaccgatttgctttgggattattatcctgttatggagataagatc-tatataatca------tatgaaatatccttccag--
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G175799_T02 (Zea mays), 5'ss of exon 4
TGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaa--aggtcacataatctggctgtatgctagctcttaactcatagctttttctgaatcatacttaatccggt--ttttctgaatcatacttaattac
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TGTGCATATAATTCTGCAAAATCTAAGAACAAATTTCATTTTTGGGGAAGCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaatgaagctacctaacactatagtttgctttttatatgaatatgattcttttatgttgggaaaggattgtgtaatcaccaggattctgtttccag--
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 4
TGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaaggtcacataatctggctgt--atgctagctcttaactcatagct-ttttctgaatcatacttaatccggtttttctgaatcatacttaattac---
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TGTGCTTATAATTCTGCAAAATCTAAGAACAAGTTTCACCTTTGGGGGAGTCATTGGAGACATGGAGATTCATTGCTGTTTGCCCTTGCTTGTGCACAGgtattaaaac-----ctcaatctgacttttcatgctagggttttattcttaactatcacccttgtaatattta-tgtgtgcctaataattgatatcagggtaatag
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G34070.1 (Glycine max), 5'ss of exon 4
TGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaaggtcacataatctggctgt--atgctagctcttaactcatagctttttctgaatcatacttaatccggtttttctgaatcatacttaattac
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TGTGCTTATAATTCTGCAAAATCTAAAAACAAGTTTCACCTTTGGGGGAGTCATTGGAGACATGGAGATTCATTGCTGTTTGCCCTTGCTTGTGCACAGgtattaataaaacctca--atctgacttttcatgctagggttttattcttaactatcacccttgtaatctttatgtgtgcctgataattgatatcagtataa
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaaggtcacataatctggctgtatgctagctcttaactca--tagc-----------------tttttctgaatcatacttaatccggtttttctgaatcatacttaattac---------------------------------------
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GCGGCTTATAATTCCGCTAAGTCAAAGAACAAGTTCCATCTTTGGGGTAGCCATTGGAGACATGGAGATTCGTTACTTTTTTCTCTTGCATGTGCTCAGgtatt-tgagattcttctcttttcttcctgttctagttagtaatggagatagtatagacgttgaaagacatttttgtgtaccatacgtattctctccaatgtgatttggtagtgattatggtcagcaagctaattttgttgcaatgaggtcggtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965652|gb|GW837251.1|GW837251EST: GCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAG GTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAA
genomic: GCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaa ... actttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGCTTACAATTCTGCAAAGTCTAAGAACAAGTTTCACCTCTGGGGAAGCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaaggtcacataatctggctgtatgctagctcttaactcatagctttttctgaatcatacttaatccggtttttctgaatcatacttaattac
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT