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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAAGCACTCTTGGACAAGATTTGCAGTGCTTATTATCTTCCAGATTGGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatctgactattaatgcatgtaatgtgtgctaaaaaaaaaaacacacacacacaccttgaatgtgactgctgtctgctcaggtttggacttatcccagtgtatggaccatgaactgctttttatccattatgtatgttaaacacaagaagttcccaattcgttattgcag

Basic information

species Vitis vinifera
transcript Vv16s0039g01410.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32249778|gb|CD715597.1|CD715597
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|22012614|gb|BQ797648.1|BQ797648
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110360881|gb|EC924323.1|EC924323
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110423065|gb|EC989400.1|EC989400
EST:     CTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: CTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|34547143|gb|CF515375.1|CF515375
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|30327692|gb|CD010954.1|CD010954
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32249517|gb|CD715336.1|CD715336
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32271736|gb|CD720895.1|CD720895
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32269217|gb|CD718376.1|CD718376
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32247466|gb|CD713285.1|CD713285
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32270284|gb|CD719443.1|CD719443
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32268132|gb|CD717291.1|CD717291
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110425522|gb|EC991909.1|EC991909
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32248194|gb|CD714013.1|CD714013
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32247586|gb|CD713405.1|CD713405
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|34547232|gb|CF515464.1|CF515464
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110421515|gb|EC987813.1|EC987813
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110416731|gb|EC982731.1|EC982731
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110376167|gb|EC941211.1|EC941211
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA