Sequence
atgc intronic sequence ATGC exonic sequenceCCTTTCGTATGATCCGAATCTTAGATTGAAACTATGGCCATCAGCAGAGGCTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAGgtatggttttgaaatgctgagattagctgaggttctgaatttatttgcttctgctactgctaatataatatcttttttattatatattagcatgacataaggatagaaatagaatggctctatgactatattatagacctgatcatgtattcctttatgaactttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G38570.1 (Glycine max), 5'ss of exon 4
CCTTTCGTATGATCCGAATCTTAGATTGAAACTATGGCCATCAGCAGAGGCTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAGgtatggttttgaaatgctgagattagctgaggttctgaatttatttgcttctgct-actgctaatataatatcttttttattatatattagcatgacataaggatagaaatagaatggctctatgactatattatagacctgatcatgtattcctttatgaactttcag
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TCTTTCATATGATCCAAATTTGAGATTGGCACTATGGCCATCAGCTGAGGCTGCTAGGGATGGCATAATGAGTATATGGGATCAAGCTGATATCATAAAGgtatattat----atgtggcttttatatga---tct-actttataaattccaattcacatttaattttgt-tgtttttcctcttgttttattttgaaa-----atgagcattcaatcattttcccctta----gtaaacctgatgtggtatttttttatgtttatgcag
upper sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G29270.1 (Glycine max), 5'ss of exon 4
CCTTTCGTATGATCCGAATCTTAGATTGAAACTATGGCCATCAGCAGAGGCTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAGgtatggttttgaaatgctgagattagctgaggttctgaatttatttgcttctgctactgctaatataatatcttttttattatatattagcatgacataaggatagaaatagaatggctctatgactatattatagacctgatcatgtattcctttatgaactttcag---
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TCTTTCGTATGATCCAAATTTGAGATTGGCACTATGGCCATCTGCTGAGGCTGCTCGGGATGGCATAATGAGTATATGGGATCAAGCCGATGTCATAAAGgtatatt------atacgtggcttgg---agatttttatatgatctactt-tataaattccaat-tcacatttaattgttttttttccctcttgttttatgttgaaaatcagcat---tctgtta-------gtaaacctgatgtggtattttttttttatgtttgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110378624|gb|EC943764.1|EC943764EST: CTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAG GTAAGTGAGGATGAAATTACATTCTTAACTGGTGGTGATGATCCTTGTGAT
genomic: CTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAGgtatggtttt ... gaactttcagGTAAGTGAGGATGAAATTACATTCTTAACTGGTGGTGATGATCCTTGTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTTCGTATGATCCGAATCTTAGATTGAAACTATGGCCATCAGCAGAGGCTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAGgtatggttttgaaatgctgagattagctgaggttctgaatttatttgcttctgctactgctaatataatatcttttttattatatattagcatgacataaggatagaaatagaatggctctatgactatattatagacctgatcatgtattcctttatgaactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT