Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAGgtatggtacaacttaggacttgtactttaggacttcaaaataaatgttccaggtttaattttttgccctgctaactgtttctttaacttaaatggtag

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G27940.1 (Glycine max), 5'ss of exon 5
TGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAGgtatggtacaa--cttaggacttgtactttaggacttcaaaataaatgttccaggtttaattttttgccctgctaactgtttctttaacttaaatggtag---
||  |||||  | || |||||||||||||| || || ||||| ||||||| | |||||||||| || || ||||| || |||||||| || || ||    |    | | |   ||     |  |   || ||| |  |   |   ||| ||    |   |||    |   |   ||||    | |   
TGCCACAAGAGCATTTCAGTTTCAAGATGTATTCTCACTGGAAAATGAAGATTCTGATGATGTGACAACTTTGATTGACAAAAAGgtgtgctaaaagatctgaagcctctgggttgttcatcaatggtatatgatatatactacttttgttcatgtttcaacctgcttacttgtttaagctatcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890836|gb|DT039891.1|DT039891
EST:     CTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAG                         GATAATGTGTTTGTGATGTCAAACAAGAAATCCAAGTATCCAGTGCTACAA
genomic: CTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAGgtatggtaca ... taaatggtagGATAATGTGTTTGTGATGTCAAACAAGAAATCCAAGTATCCAGTGCTACAA
EST: gi|77585285|gb|DV221734.1|DV221734
EST:     CTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAG                         GATAATGTGTTTGTGATGTCAAACAAGAAATCCAAGTATCCAGTGCTACAA
genomic: CTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAGgtatggtaca ... taaatggtagGATAATGTGTTTGTGATGTCAAACAAGAAATCCAAGTATCCAGTGCTACAA