1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAACAAGGGATGTGGTATGACTTTCAAAGAAAAGGATAATCATGATACTGCTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGGgtgggatatgtgttttatgacattgcatcttaaattcagttgcatttattgttactttctattttgattggttcctgacttctgaatacaatgctatgatgtgtaacttttgtag
species | Vitis vinifera |
transcript | Vv16s0022g02040.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGG TGGAAATGCTGTGACATTCATGTGAAGGAGTTCGATGAATTCATGAATATAEST: gi|34320293|gb|CF373047.1|CF373047
genomic: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGGgtgggatatg ... acttttgtagTGGAAATGCTGCGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATA
EST: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGG TGGAAATGCTGTGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATAEST: gi|46918188|gb|CN547517.1|CN547517
genomic: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGGgtgggatatg ... acttttgtagTGGAAATGCTGCGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATA
EST: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGG TGGAAATGCTGTGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATAEST: gi|83277294|gb|DV941302.1|DV941302
genomic: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGGgtgggatatg ... acttttgtagTGGAAATGCTGCGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATA
EST: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGG TGGAAATGCTGTGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATA
genomic: CTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGGgtgggatatg ... acttttgtagTGGAAATGCTGCGACATTCATGTGAAGGAGTTCGATGAATTCATGAGTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAGGGATGTGGTATGACTTTCAAAGAAAAGGATAATCATGATACTGCTTGCAGTTATCATCCTGGGCCTGCAGTTTTCCATGACCGGCTAAGAGGGgtgggatatgtgttttatgacattgcatcttaaattcagttgcatttattgttactttctattttgattggttcctgacttctgaatacaatgctatgatgtgtaacttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG