1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGATGGGAGCTTACGGATATAACATAGAGCACATACTGATGGTTGATATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgaccttctactgtttttttcttgttcttattgcaactggacaaattttctcattcaaacttccaatgtaggtagaatggattttcaatatccaga...
species | Vitis vinifera |
transcript | Vv16s0022g01690.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATTATTCCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAG CTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCCEST: gi|110393502|gb|EC958789.1|EC958789
genomic: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgacct ... tgtcttacagCTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCC
EST: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAG CTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCCEST: gi|161716029|gb|FC065535.1|FC065535
genomic: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgacct ... tgtcttacagCTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCC
EST: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAG CTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCCEST: gi|34542787|gb|CF511019.1|CF511019
genomic: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgacct ... tgtcttacagCTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCC
EST: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAG CTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCCEST: gi|110366549|gb|EC930459.1|EC930459
genomic: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgacct ... tgtcttacagCTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCC
EST: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAG CTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCC
genomic: TATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgacct ... tgtcttacagCTCAAAGGCTTCAGCTTGCTAATGTATACAAGGGAGAGGCTGAAAAGATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATGGGAGCTTACGGATATAACATAGAGCACATACTGATGGTTGATATTATACCTGATGCTTCTGTACGCAAGGCAATGAATGAGATAAATGCAGgttttgaccttctactgtttttttcttgttcttattgcaactggacaaattttctcattcaaacttccaatgtaggtagaatggattttcaatatccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggtagaa