1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGCTGCTGTTTTATAGTAAACAAAGCAAGTCTATTCGAGGGGCAAACGTGGTATACCGGCGAATTGCTTCACAAGTTGATAAACCTGCCATATATAATGgtgagtttttccttactgctttcctgttgggtaagaaagcataaagtttacttttttgttttatagtatcttataaaatctaaagattatataccacaaa...
species | Vitis vinifera |
transcript | Vv16s0013g01540.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTATACCGGCGAATTGCTTCACAAGTTGATAAACCTGCCATATATAATG CATTTAACTTGGAGAAAACCTTTAAAACAACATTTTCTCTGCTTATACTTCEST: gi|26257759|gb|CA808822.1|CA808822
genomic: GGTATACCGGCGAATTGCTTCACAAGTTGATAAACCTGCCATATATAATGgtgagttttt ... tcatatgcagCATTTAACTTGGAGAAAACCTTTAAAACAACATTTTCTCTGCTTATACTTC
EST: GGTATACCGGCGAATTGCTTCACAAGTTGACAAACCTGCCATATATAATG CATTTAACTTGGAGAAAACCTTTAAAACAACATTTCCTCTGCTTATACTTC
genomic: GGTATACCGGCGAATTGCTTCACAAGTTGATAAACCTGCCATATATAATGgtgagttttt ... tcatatgcagCATTTAACTTGGAGAAAACCTTTAAAACAACATTTTCTCTGCTTATACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGCTGTTTTATAGTAAACAAAGCAAGTCTATTCGAGGGGCAAACGTGGTATACCGGCGAATTGCTTCACAAGTTGATAAACCTGCCATATATAATGgtgagtttttccttactgctttcctgttgggtaagaaagcataaagtttacttttttgttttatagtatcttataaaatctaaagattatataccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa