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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag

Basic information

species Vitis vinifera
transcript Vv15s0048g02840.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g36710.1 (Oryza sativa), 5'ss of exon 4
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag
||||||||| |||||||| ||||  || |||| |||||| ||||  |||||| | || || ||||||||||||||||| |||||||| || ||||||||||| | |  | |   || | ||       |||| ||||      |||||| || |   | |    ||  |    |||    |  || |||  || || || |||                                                
ATACACTGAGGAAGATGCTAAAGTTATCGTTGAACAAATATTAAATGTTGTTTCTTTCTGCCATCTTCAAGGCGTTGTTCACCGTGATTTGAAGCCAGAGgtctgtcttctctgtttagtacataaactgaattgtgtt----tatcttgttacaaatatttttgatatatcccttctaataattctacccttgatcctatcag-----------------------------------------------

upper sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g50030.1 (Oryza sativa), 5'ss of exon 4
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaatt-ctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag
|||||| || |||||||| ||||| ||||||||||| || || ||||| || || || ||||||||||| || || ||||| ||||| || ||||||||||| |  | |      |    | |  |  | |  |||     ||  || ||| |   |   |  | |  ||    ||    |  |   | | |    |  | | |  | |||||  || |   |  | |                        
ATACACAGAGGAAGATGCCAAAGCGATTGTTGTACAGATTTTGAGCGTAGTAGCCTTCTGTCATCTTCAGGGGGTAGTGCATCGTGATTTGAAGCCAGAGgtgtgctttgaaatcttggaactaat--ttatgtgtagtttacattcgtatacgtatgcagtcacatttgtaaattatacttgtagaatgctaggctatttttatgacatagttctattcttttgtccag----------------------

upper sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G115518_T02 (Zea mays), 5'ss of exon 4
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgttt-cttcttttgcttgat-taatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataat--tactgatactctttc-----------ctcctcgttgtcgaacag----------------------
||| || ||||||||||| ||||| ||  ||||||| || || ||||| || || || ||||||||||| || || ||||| ||||| || ||||||||||| | |||   |  |||  | ||  |||  |  |     || | |||   |||    ||       |   | || ||  | |    ||||  | || || | |    ||||   | | |    | | || ||  ||            || |   ||||   |||                       
ATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTGAGCGTAGTGGCCTTCTGTCATCTTCAGGGAGTAGTGCATCGTGATTTGAAGCCAGAGgtatgcttgaatcactttgtgtatagtttgtatatatgtacagtctag--tatgtgtttgactggggttttacttctgccatcgtatttaactgtacttgtttttttatatttaagtgacagcaataatgcttgttttgaaagctaggctgccttttgtgacacaattgctatatttcattggcacag

upper sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G05750.1 (Glycine max), 5'ss of exon 4
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag
 ||  |||| || ||||| || |  || ||| | || ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| || || ||||||| | ||||      ||||   |  ||  |   | |      ||  ||    ||          ||| ||| |||   |  |   | | |||||| |   |    |||  ||||||   |||| || |||     |  |  |   ||||
GTATTCTGAGGAGGATGCCAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCATTTTGTCATCTTCAAGGTGTTGTGCACCGTGACTTGAAACCTGAGgtttgtgctttaa----attatcatccatata--ataatttgtaatgataacatct----------agttctgtttttaatattacgaggattaattat---atagaatatcaataat-gttgattcttttttggagtt-tgcttttacag

upper sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G02340.1 (Glycine max), 5'ss of exon 5
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttg--cttgattaatgttgatgaactgtgaccg-actatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag
 ||  | || || ||||| || |  || ||| | || ||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||| | ||||    | | ||  || |  || |  |||      |  ||||  |||  ||||| | |  |                  | | | |||||| | | |  ||||   ||||||   |||| || |||        |  |   ||||
GTATTCAGAGGAGGATGCTAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTACACCGTGACTTAAAACCTGAGgtttgtgctttaaatcatcatccatat-aataatttgtagtgataacatctagttctttttttaatatca------------------tgaggattaattatataagaatat--caataat-gttgattctttttttggaatttgcttttacag

upper sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G46700.1 (Arabidopsis thaliana), 5'ss of exon 4
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgct-ttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag
|||| | || || |||||||| || ||||| ||||||||  |||  |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||  ||| |      ||  ||    | || | |||  |  |   ||| |   |    |  ||   || || ||   |  ||  ||                                                              
ATACCCGGAGGATGATGCAAAGGCGATTGTCGTACAAATTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGTGACTTAAAGCCAGAGgtctgtt--tttacaaagaaaactttccctatctct-acctccagtagcattacacatcattactaaacactcctgttaccttgttcaacag------------------------------------------------------------