Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagctatctaatcatgctgcacaatgttgtctggcattctcctaatagc...

Basic information

species Vitis vinifera
transcript Vv15s0048g01980.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g02540.1 (Oryza sativa), 5'ss of exon 4
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagcta--tctaatcatgctgcacaatgttgtctggcattctcctaatagc--
|  |||||||| |||||    || ||||| |||||  | ||| | || |||||||| ||||| ||| || ||||||||||||||||||||  || | |  | ||||||     | || | |   | ||| | ||  |||  ||  | ||| ||||     |  |||| | |   |   |  |||  |   
AGCAAAGTTATCGACAACAGTAATTTCCGAAACTTTCTGGAGCTGGTGCCTGAAGTGAGGGAACTTGTTAATGATTTCTATTCAAGgtaaagttgtagcttcatgtgt---tccagttagtac-tcagtgtaccgcataattagatataaacatgtgtatcgctgtttttttataacatgttaaatgaaa

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G062210_T02 (Zea mays), 5'ss of exon 3
--------------AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagctatctaatca--tgctgcacaatgttgtctggcattct-cctaatagc-
              |  ||||| || |||||| |||||||||| |||||  | ||| | || |||||||||||||||||  || ||||||| ||| |||||||   | ||| | | |  |  |   | |||    ||   | ||    | ||| |  | |  |    |  |||||  | |  | ||| |  |     |   |  
CGCATTTTGCATAGAGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgta---taatgctatcagattagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcact-tatcttgtggtaaacagtgcagccgtg

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G062210_T01 (Zea mays), 5'ss of exon 4
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagctatctaatca--tgctgcacaatgttgtctggcattctcc-taatagc-
|  ||||| || |||||| |||||||||| |||||  | ||| | || |||||||||||||||||  || ||||||| ||| |||||||   | ||| | | |  |  |   | |||    ||   | ||    | ||| |  | |  |    |  |||||  | |  | ||| |  |     |   |  
AGCAAAGTCATTGACAATATCAACTTCCGTAACTTTCTGGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTTATGCAAGgta---taatgctatcagattagccttgtgtatcattgacaatcgctatcatatcagtgttgttgattattgcact-tatcttgtggtaaacagtgcagccgtg

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G829967_T01 (Zea mays), 5'ss of exon 2
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgta----acttt----atggtcttatgtgt----gatctctgtgattttattagtctgccttatagctatctaatcatgctgcacaatgttgtctggcattctcctaatagc
|| ||||| || |||||| |||||||||| |||||  ||||| | || |||||||||||||||||  || |||||||  || |||||||    |||      || | ||| ||| |    ||||      ||||||||||  |   | ||   |    | |  || |  ||| ||  | |    ||            
AACAAAGTCATCGACAATATCAACTTCCGTAACTTTCTAGAGCTGGTGCCTGAAGTAAGGGAGCTGGTTAATGATTTTAATGCAAGgtatgatactaccagaatagccttgtgtatcgttgatcatctctattttattagggttgttgattcttgc--acttgtggtaaacagtgcagccatatatgt----------

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G01880.2 (Glycine max), 5'ss of exon 3
--------------AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgat-tttattagtctgccttatagctatctaatcatgctgcacaatgttgtctggcattctcctaatagc
              | ||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||| || ||  ||||||| || ||||||||| ||  |  || | |      | ||| || | || |    | |    |||       || |||    |||  |  || | |    ||   | | |   
TCAATATCTGGCAGAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggtcttcatgttctctttttctttgttgttcacctatgtaatgtattagggattagtcactaggcatcacttttttttttcttgctcaactga-

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G01880.1 (Glycine max), 5'ss of exon 4
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgat-tttattagtctgccttatagctatctaatcatgctgcacaatgttgtctggcattctcctaatagc
| ||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||| || ||  ||||||| || ||||||||| ||  |  || | |      | ||| || | || |    | |    |||       || |||    |||  |  || | |    ||   | | |   
AGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggtcttcatgttctctttttctttgttgttcacctatgtaatgtattagggattagtcactaggcatcacttttttttttcttgctcaactga-

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G08370.1 (Glycine max), 5'ss of exon 4
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgat-tttattagtctgccttatagctatctaatcatgctgcacaatgttgtctggcattctcctaatagc-
|  |||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||| || ||  ||||||| || ||||||||| ||  |  || | |      | ||| || | || |    | |    |||       || |||    || | |  ||   |  | | ||  |||  |  
AGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggtcctcatgttctctttttctttgttgttcacctatgtaatgtattaggggttagtcactaggcgccacttttcttttcttgct--taactgaa

upper sequence: Vv15s0048g01980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G61140.1 (Arabidopsis thaliana), 5'ss of exon 4
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagctatctaatcatg--ctgcacaatgtt-gtctggcattctcctaatagc---
 | ||||| || |||||| ||||||||||||| ||||| ||| |||| ||||| || ||||| |||||  | ||||||||||||||||  |   ||  |||||     ||     ||   ||| ||     ||   | |  || |||| | ||  ||    | | || || ||     |  |||| | |   
CAAAAAGTCATTGACAATATCAACTTCCGGAATTTCTTGGAGCTAGTGCCTGATGTGAGGGAACTTATCAACGATTTCTATTCAAGgttgc---atattcttac-caagactctcgtctatttcttgcatagcacca-aatta-ctaaccttgaactaaggattattagtgtgaatacccactaagaccaga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699322|gb|EE076217.1|EE076217
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351052819|gb|FQ456547.1|FQ456547
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATCATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351038425|gb|FQ461117.1|FQ461117
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|110718443|gb|EE095284.1|EE095284
EST:     TAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTNCA-G                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGT
genomic: TAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATT-CAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGT
EST: gi|349814204|gb|FQ414823.1|FQ414823
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|352786554|gb|FQ479761.1|FQ479761
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351044672|gb|FQ443203.1|FQ443203
EST:     TTAGAGTTAGTACCTGAAGTAGGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|110369076|gb|EC933221.1|EC933221
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351034216|gb|FQ463150.1|FQ463150
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATCATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351053350|gb|FQ455686.1|FQ455686
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|352776514|gb|FQ474816.1|FQ474816
EST:     AGCTTTTTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: AGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351033986|gb|FQ463041.1|FQ463041
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351035868|gb|FQ463713.1|FQ463713
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|349828231|gb|FQ416184.1|FQ416184
EST:     TTAAAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGGCTTGATTACCTTGGAAATCTCAAAAACAAACCTGT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAA-CAAACCTGT
EST: gi|110418008|gb|EC984114.1|EC984114
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351045624|gb|FQ440809.1|FQ440809
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|110378199|gb|EC943318.1|EC943318
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|352798742|gb|FQ478377.1|FQ478377
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|352791446|gb|FQ481025.1|FQ481025
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATCATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351038112|gb|FQ465229.1|FQ465229
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351048369|gb|FQ449461.1|FQ449461
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|349823325|gb|FQ402524.1|FQ402524
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|352794164|gb|FQ479406.1|FQ479406
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351045527|gb|FQ440712.1|FQ440712
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351051967|gb|FQ450658.1|FQ450658
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351054564|gb|FQ462671.1|FQ462671
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351052534|gb|FQ456382.1|FQ456382
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATCATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|349820411|gb|FQ406967.1|FQ406967
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351056545|gb|FQ442373.1|FQ442373
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|26266519|gb|CA817582.1|CA817582
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|349821444|gb|FQ411065.1|FQ411065
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351047650|gb|FQ455047.1|FQ455047
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|110367302|gb|EC931231.1|EC931231
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
EST: gi|351023589|gb|FQ432972.1|FQ432972
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAG                         CCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttat ... cttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATAAAGTTATAGACAATCTCAACTTCCGGAACTTCTTAGAGTTAGTACCTGAAGTAAGGGAGCTTATTCATGATTTCTATTCAAGgtaactttatggtcttatgtgtgatctctgtgattttattagtctgccttatagctatctaatcatgctgcacaatgttgtctggcattctcctaatagc

- - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT