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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcgacaaattttcttgacattattatggtgataacaatttgctataactgttattggttatcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01810.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G01960.1 (Glycine max), 5'ss of exon 4
GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcgacaaattttcttgacattattatggtgataacaatttg-ctataactgttattggttatcag
|||||||| ||||| || ||||| |||| ||||||||||||||| ||  ||||||||  |||||||||| |||||||||| | |     | || |||   ||||  |   ||    ||  ||   | |||    ||||| ||  |||
GTTGGACCGCTACCTACTGGTGGTTCTTTCATCATTATGGAATTCATACAATTTGGTGCATCTAGAGGCTATCAGgtgagatacctagcaattgcttctgattaggaaaatgtatgcaccttaattgtaatc--tattgcttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28966833|gb|CB345866.1|CB345866
EST:     ATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: ATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|351033360|gb|FQ446592.1|FQ446592
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|351044742|gb|FQ448996.1|FQ448996
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|351013105|gb|FQ424810.1|FQ424810
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|110713565|gb|EE089595.1|EE089595
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|71881177|gb|DT030232.1|DT030232
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|28966778|gb|CB345811.1|CB345811
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA