1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AAACTACTCGGGGTTGTTTAGACGTCCACGTGGAATGTATTTCAGTGGCAAGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtgaatcttggaagagagttaattaaaacatggtatttcccctttatctatccctattccatagttattatttaacattccatttgttatatc...
species | Vitis vinifera |
transcript | Vv15s0046g03670.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGACEST: gi|110685703|gb|EE062665.1|EE062665
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG TTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGACEST: gi|110711784|gb|EE088657.1|EE088657
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATTGTGATAACAGATGGCAGTCGTATTCTTGGGTCTGGGTGAEST: gi|110710958|gb|EE087607.1|EE087607
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGG-TCTGGGTGA
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATTGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAAEST: gi|110698263|gb|EE075598.1|EE075598
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGACEST: gi|110711356|gb|EE087746.1|EE087746
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATTGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGACEST: gi|110699671|gb|EE076873.1|EE076873
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGACEST: gi|110719431|gb|EE094555.1|EE094555
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATTGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGACEST: gi|110712870|gb|EE088292.1|EE088292
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
EST: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAG GTGGACATGATTGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
genomic: AGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtg ... tgtgttgcagGTGGACATGATAGTGATAACAGATGGCAGTCGTATTCTTGGTCTGGGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTACTCGGGGTTGTTTAGACGTCCACGTGGAATGTATTTCAGTGGCAAGGATAAAGGAGAGATGATGTCCATGATCTACAACTGGCCAGCTCACCAGgtactgtgtgaatcttggaagagagttaattaaaacatggtatttcccctttatctatccctattccatagttattatttaacattccatttgttatatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatccc