Sequence
atgc intronic sequence ATGC exonic sequenceGGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctgttgttttagtttttaattcacctttgcaacttcttccctatattttgatgttcatgattcatccatactaaatggtgttcatgcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g03180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G07970.1 (Glycine max), 5'ss of exon 4
GGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctgttgttttagtttttaattcacctttgcaacttcttccctatattttgatgttcatgattcatcca-tactaaatggtgt--tcatgcag
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AGCCCAAAAGCAGCTCTCTGCTGTTGCTGCTTGGGAAAACAGCAAGAAAGCAGCTCTTGAAGCTCAGCTGAGAAAAATTGAGgt-attatttgttgctcagttattggttgatacaatgacatagttttttctattattcatgatg--catgtttggcctagttctgaacattataatcaagata
upper sequence: Vv15s0046g03180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G07970.4 (Glycine max), 5'ss of exon 3
------------------GGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctgttgttttagtttttaattcacctttgcaacttcttccctatattttgatgttcatgattcatcca-tactaaatggtgt--tcatgcag
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ATTGTTTTCTGTTAACAGAGCCCAAAAGCAGCTCTCTGCTGTTGCTGCTTGGGAAAACAGCAAGAAAGCAGCTCTTGAAGCTCAGCTGAGAAAAATTGAGgt-attatttgttgctcagttattggttgatacaatgacatagttttttctattattcatgatg--catgtttggcctagttctgaacattataatcaagata
upper sequence: Vv15s0046g03180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G39730.1 (Glycine max), 5'ss of exon 4
GGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctg-ttgttttagtttttaattcacctttgcaactt-cttccctatattttgatgttcatgattcatccatactaaatggtgttcatgcag---
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AGCTCAAAAACAACTCTCAGCTATTGCTGCTTGGGAAAACAGCAAGAAGGCAACTCTTGAAGCTGAGCTGAAAAAAATTGAGgtaatacttaattaaccggttcagtattta--ttagcatggtgacatgctacgtaataacatgatgtatatggcac---tggaccgaagaaagtgcatcctttct
upper sequence: Vv15s0046g03180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G01550.1 (Glycine max), 5'ss of exon 4
GGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctgttgttttagtttttaattcacctttgcaacttcttccctatattttgatgttcatgattcatccata-ctaaatggtgttcatgcag
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AGCCGAAAAACATCTCTCTGCTGTTGCTGCTTGGGAAAACAGCAAGATAGCAGCTCTTGAAGCTCAGCTGAGAAAAATTGAGgtaaatatttgttgctcagttattggttgatacaatgacattgttttttctattattcatgatat-catgatgcatgtttggcctagttctgaacattata
upper sequence: Vv15s0046g03180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G61260.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctgttgttttagtttttaattcacctttgcaacttcttccctat-attttgatgttcatgattcatccatactaaatggtgttcatgcag
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AGCTGAGAAGAAGATTGCAGATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgta------------taataaacttagcaatagagaggtgaaacggttttaatgtgattgagaagtgaagtgttaatttgtga-gttttttctcaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33409095|gb|CF214722.1|CF214722EST: GGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAG GAAGAATTGGAGAAGAAGAAGGCAGAATATGC
genomic: GGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccc ... gcatgatcagGAAGAATTGGAGAAGAAGAAGGCAGAATATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCCAGAAAAAGCTTTCTGATGTTTGTGCATGGGAAAACAGCAAGAAAGCAGCTGTTGAAGCTAATCTGAAGAAGATTGAGgttactgccccctgttgttttagtttttaattcacctttgcaacttcttccctatattttgatgttcatgattcatccatactaaatggtgttcatgcag
- - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttccc