Sequence
atgc intronic sequence ATGC exonic sequenceGATCTTTCGTCAGAATGAAAAGTATTACAAGAGATTTCCTCAGGATATTGAAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGGgtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G39020.1 (Glycine max), 5'ss of exon 4
GATCTTTCGTCAGAATGAAAAGTATTACAAGAGATTTCCTCAGGATATTGAAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGGgtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaata----gactaaccctcacaaatttttcccttgttacaag
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AGCTATACATCAAAATGAGAAGTACTACAAGAGATTCCCTCAAGATATTAAAATTGTTCAAGAACTTGTTAATTATTTGGCTGAACAAGAAGGAGGAGGGgtga------ttatctgtctcacatttttcttattgttgttaaacatgaaaat-gtgagctatgttctgtcaaatcctaatttgcttctctctttgtgcag-
upper sequence: Vv15s0046g02160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G61540.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCTTTCGTCAGAATGAAAAGTATTACAAGAGATTTCCTCAGGATATTGAAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGGgtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaag
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AGTTGCTCGCCAAAATGAAAAATACTACAAGAGATTCCCTCAAGACATTGAGATTGTTCGTGAACTCGTAAATTACTTGGCTGAATCTGAAGGTGGCGGGgtgagggattacaacatttgctcaatccactgaccagtttagttt----agttcctta--------cttgtctctgtttctttgtctttag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110375135|gb|EC940096.1|EC940096EST: AAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGG GTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTT
genomic: AAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGGgtgagggaat ... ttgttacaagGTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCTTTCGTCAGAATGAAAAGTATTACAAGAGATTTCCTCAGGATATTGAAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGGgtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG