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AAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAGgtgcagatctcttgtgtttattctgaaggatatgacccgtttttttattggctgaaaaatctagtggagtgtctattgtgtggcttctgatatcgttatt...
species | Vitis vinifera |
transcript | Vv15s0046g02040.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAG ATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGCEST: gi|110700064|gb|EE077676.1|EE077676
genomic: AGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAGgtgcagatct ... tttcttgcagATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGC
EST: AGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAG ATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGCEST: gi|30304107|gb|CB980901.1|CB980901
genomic: AGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAGgtgcagatct ... tttcttgcagATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGC
EST: AGATACTGCATACCCTTGCGTTCTTAGCTGANGTTATGATTTGGTCACAG ATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGC
genomic: AGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAGgtgcagatct ... tttcttgcagATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAGgtgcagatctcttgtgtttattctgaaggatatgacccgtttttttattggctgaaaaatctagtggagtgtctattgtgtggcttctgatatcgttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat