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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag

Basic information

species Vitis vinifera
transcript Vv15s0046g02030.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagt--------ccatttccttttggtaatgaatcgaccttc-acataaaatggcatattgagaagatttctgat-atttcccaatggctttccag
|||| |  || |||||| |||  || || ||||||||||| |||||||| || || || |||| ||| ||||| || || ||||| ||||||||||| ||||||||        || || | |  |  |    | ||   || | ||| |    |  | || ||     |   |  | |  |     ||   || |||
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctcatcgctactcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgctgttgcag

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgaga---agatttctgatatttcccaatggctttccag---------------------------------------------------------
 |||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||  |||||||| || ||||| |||||||||||||| ||||||||    ||    |  | | |       |  || | ||  |    ||| | ||    |  || |||     |  |||||  |     |                                                         
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagttcctgtatgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 4
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag---------------------------------------------------------
||||||||||||||||||| ||||| || |||||||| || || ||||| || ||||||||||  ||||| || || ||||| |||||||| ||||| ||||||||    ||    |  | | |       |  ||  |  ||||   |  | |   |  || |||     |  |||||  |     |                                                         
TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaagcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 4
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag--------------------------------------------------------------
||||||||||||||||| | ||||| |||||||||||||| || ||||| || |   ||||    |||||||| || ||||| |||||||| ||||| ||||||||    ||    |  | | |       | ||      || |   || | |     ||  |||  |   |  ||||  ||   ||                                                              
TTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctagctttgttgccaattataat-tagtttcaatacctgtaagagcaaaatgtgttattagtcattcttactctcaaatttaaagtccacagtactgattctctcccctttctttttctgcag

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 5
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag--------------------------------------------------------------
|||||||||| |||||| | ||||| |||||||||||||| || ||||| || |   | ||    |||||||| || ||||| |||||||| ||||| ||||||||    ||    |  | | |    | | ||| |     |||   |  |        |   ||  |   |  ||||  ||   ||                                                              
TTGATCGCCAGTGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcatttt-cctatctttattgccaattataattaatttcagtacttgtaagagcaaaatgtgttattagttattattattctcaaatttatggtactcactcattggttttctccctttctctttctgcag

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttag--------tccatt---tccttttggtaatgaatc-gaccttcacataaaatg-gcatattgagaag-atttctgatatttcccaatggctt-tccag
||||||||||||||||  ||||||| || |||||||| || || ||||||||  | |||||||  |||||||| || ||||||||||||||||| ||||||| |           ||||   ||  |   | |||      | |  ||      |||| | |||||  |||  |  | | |  ||      ||  || |  ||
TTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGgtaaactattaaactcattaactctctcctgcaatctgcaaggcagtctttaggaatgtgaatattaggaaataacttttactttgtgggttgatttgtttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110377663|gb|EC942742.1|EC942742
EST:     TTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGG                         GTATGTTGCACCAGAATATGCTTGCACTGGTATGCTGAATGAAAAAAGCGA
genomic: TTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccat ... ggctttccagGTATGTTGCACCAGAATATGCTTGCACTGGTATGCTGAATGAAAAAAGCGA