Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTGCTGGCCTGTGGGTACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgctggttttatttttaaacatttataatatgaactatatgttgatctgccatgttaatttttgttattatgattttggaaaacag

Basic information

species Vitis vinifera
transcript Vv15s0046g01760.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G38890.1 (Glycine max), 5'ss of exon 4
ATTATTGCTGGCCTGTGGGTACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgctggttttatttttaaacatttataatatgaactatatgttgatctgccatgttaatttttgttattatg-attttggaaaacag------
|||||||||||| | ||| | ||||| ||  ||||||  || ||||||||||||||| |||| |||||||||| || | ||   |     ||||||  | | |||| |    | | | |  || ||  |||  | ||| |    |||   ||| |  |   ||       
ATTATTGCTGGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAAgtaagaatacttagtactcctttaaat-tgtgtaattttttttttttttaaatttggtatggaattttattcatttacatattcttcatttcatgggcag

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G06830.1 (Glycine max), 5'ss of exon 4
ATTATTGCTGGCCTGTGGGTACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgctggttttatttttaaacatttataatatgaactatatgttgatctgccatgttaatttttgttattatgattttggaaaacag
 |||||| |||   |||| |  | || ||  ||||||| || |||||||||||||||||||| |||||  ||| ||    |   ||   ||| | | ||  ||  | | ||   ||||   ||   | |||  | ||||  |||||      || | |     
GTTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaatctattccgtttcatatata-atgttttcaaagttatgaatatgaactatga-agttttacttatttcttcatttgcag----

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G03410.1 (Glycine max), 5'ss of exon 4
ATTATTGCTGGCCTGTGGGTACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatga-ctgctggttttatttt-taaacatttataatatgaactatatgttgatctgccatgttaatttttg-ttattatgattttggaaaacag
||||||| |||   |||| |  | || ||  ||||||| || |||||||||||||||||||| |||||  ||| || |  ||  | |  |||| |  | | | ||  | |||    ||||   ||   | |||  | ||  || ||   || || ||      |||
ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaactattctcgttttatttataataatgttttgatagttatgaatatgaactatgcaatttactgatttccataatcttcatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010623|gb|BQ795657.1|BQ795657
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTGGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110364951|gb|EC928577.1|EC928577
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|30251943|gb|CB969676.1|CB969676
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110387260|gb|EC951915.1|EC951915
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|51050498|gb|CO818582.1|CO818582
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|22015520|gb|BQ800554.1|BQ800554
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110356590|gb|EC919531.1|EC919531
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110711162|gb|EE087391.1|EE087391
EST:     CTGTCGAATC-TGGGGAGTTGCTGCAATTTCTTGACCTTGTTTAACATA-                         CTTTTTGTTTTGCTGCACCCTGTACCAGTTATTTATGAAAAGT
genomic: CTGTCGA-TCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTT-GTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGT
EST: gi|156736226|gb|EV240347.1|EV240347
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110404885|gb|EC970410.1|EC970410
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110685758|gb|EE062756.1|EE062756
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110703673|gb|EE080726.1|EE080726
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110686740|gb|EE064724.1|EE064724
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110388764|gb|EC953547.1|EC953547
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110383813|gb|EC948214.1|EC948214
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|22012608|gb|BQ797642.1|BQ797642
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|37188737|gb|CF608086.1|CF608086
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGT
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGT
EST: gi|30124796|gb|CB910135.1|CB910135
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|33404737|gb|CF210364.1|CF210364
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|27579632|gb|CB002327.1|CB002327
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|33405304|gb|CF210931.1|CF210931
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|71889622|gb|DT038677.1|DT038677
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|46918701|gb|CN548030.1|CN548030
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|34364114|gb|CF405699.1|CF405699
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|351025251|gb|FQ434264.1|FQ434264
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAAAAGGTATG
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAG-TATG
EST: gi|28958752|gb|CB339369.1|CB339369
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|32457739|gb|CD798913.1|CD798913
EST:     TGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: TGTCGATCCTGGGGAGTTGCTGCAATTTCTTG--ACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|30251979|gb|CB969712.1|CB969712
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|161714715|gb|FC064487.1|FC064487
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|18459624|gb|BM437902.1|BM437902
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|30252019|gb|CB968658.1|CB968658
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110375905|gb|EC940931.1|EC940931
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|32245968|gb|CD711787.1|CD711787
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110697222|gb|EE074019.1|EE074019
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|34544981|gb|CF513213.1|CF513213
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110703323|gb|EE080068.1|EE080068
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|34545973|gb|CF514205.1|CF514205
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110700522|gb|EE078654.1|EE078654
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTAC-TAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|22009922|gb|BQ794956.1|BQ794956
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|71881760|gb|DT030815.1|DT030815
EST:     ACTGTCAATCCTGGGGAGTTGGTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110369917|gb|EC934090.1|EC934090
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110697771|gb|EE075141.1|EE075141
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110697303|gb|EE074171.1|EE074171
EST:     CTGTCAATCCTGGGGAGTTGCTGGCA-TTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAATATGAAGATC
genomic: CTGTCGATCCTGGGGAGTTGCTG-CAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|27578893|gb|CB001588.1|CB001588
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110391006|gb|EC955957.1|EC955957
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110379367|gb|EC944555.1|EC944555
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110381321|gb|EC946648.1|EC946648
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110428266|gb|EC994732.1|EC994732
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|33405388|gb|CF211015.1|CF211015
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110689568|gb|EE065904.1|EE065904
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTAT
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTAT
EST: gi|110374691|gb|EC939613.1|EC939613
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110724371|gb|EE100139.1|EE100139
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110372585|gb|EC936766.1|EC936766
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|351025722|gb|FQ426736.1|FQ426736
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110379627|gb|EC944837.1|EC944837
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110412728|gb|EC978487.1|EC978487
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110705961|gb|EE083407.1|EE083407
EST:     CTGTCGATCCTGGGGAGTTGCTGNCA-TTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: CTGTCGATCCTGGGGAGTTGCTG-CAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|22007820|gb|BQ792854.1|BQ792854
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|34544550|gb|CF512782.1|CF512782
EST:     ACTGTCGATCCTGGGGAGTTGCTGCGATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110698138|gb|EE075804.1|EE075804
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAAAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|34543863|gb|CF512095.1|CF512095
EST:     ACTGTCGATCCTGGGGAGTTGCTGCGATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|28959549|gb|CB339775.1|CB339775
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110416492|gb|EC982478.1|EC982478
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|161713562|gb|FC062507.1|FC062507
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|30251904|gb|CB969637.1|CB969637
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATG-GATCNTATGAAGAT
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAG-TATGAAGAT
EST: gi|110725704|gb|EE102513.1|EE102513
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110705728|gb|EE082910.1|EE082910
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGGTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAATATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110721044|gb|EE097594.1|EE097594
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110360882|gb|EC924324.1|EC924324
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110418289|gb|EC984426.1|EC984426
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110694822|gb|EE072276.1|EE072276
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|71876625|gb|DT025680.1|DT025680
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|110429397|gb|EC995888.1|EC995888
EST:     ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
EST: gi|33404820|gb|CF210447.1|CF210447
EST:     ACTGTCAATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAA                         CTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC
genomic: ACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgc ... tggaaaacagCTTTTGTTTTGCTGCACACTGTACCAGTTATTTATGAGAAGTATGAAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTATTGCTGGCCTGTGGGTACTGTCGATCCTGGGGAGTTGCTGCAATTTCTTGACCTTGTTTTACATAAgtatgactgctggttttatttttaaacatttataatatgaactatatgttgatctgccatgttaatttttgttattatgattttggaaaacag

- - - - - - - - - - - - - - - - - - -  TGCTGC