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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactattatgtccatttcttttaaatct...

Basic information

species Vitis vinifera
transcript Vv15s0046g00990.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 4
AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcat-tggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactattatgtccatttcttttaaatct--
||||| |||||| |||||||||| || || ||||| |  ||||||||||| || || |||||   ||| |||| |||||||||||||||||||||| ||||||| ||| | | ||    || |||    |   | ||  || |     |||    | || |  | |||   ||   |    ||  ||||| ||||| |  |  
AATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAAGTGGTCAAAACACTCTTCGCTCGGGCAAAGATAGATCCTGGATTTACAACTCTGGgtagccatcttgaagtttctttcatgttattttatatatttcattctaacaa---tcataaaataaatctattgtgtcagttgctcattttttttataaataa

upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 4
AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactat-tatgtccatttcttttaaatct-----
||||| |||||| | ||||||||||| || ||||| |  ||||||||||| || || ||  ||| ||| |||| ||||||||||||||| |||||| | |||||||||    ||| || |   | | | |   | | ||  |   |    ||  || | ||    | | ||  ||| | |||| |  ||  |   ||| ||     
AATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACACTACTGACTCGGGCAAAGATAGATCCTGGATTCACAACTCTTGgtaggcatcttaaggtctct--gtcatgcc---atttatgtattgcattgtaaattgtaattaataatagtctactgtatatg-ctgttcatagaaaacctttgta

upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 4
AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacat-ccacatattttatcatcttaattggttaactattatgtccatttcttttaaatct-
||||| |||||| | ||||||||||| || ||||| |  ||||||||||| || ||  |  ||| ||| |||| ||||||||||||||| |||||| | |||||||||       |  ||        |   |   |||| |  |    |||  |  ||  |  | | |  |   ||||| | |    |     || |    
AATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACATTACTGACTCGGGCAAAGATAGATCCTGGATTCACAACTCTTGgtaggcatc--ttaactcttaaggtctctgtcatgccatttatgtattgcattgtaaattgtaattaataatagtctattgtattttctatccatagaaaac

upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactattatgtccatttcttttaaatct
|||||||||||| | || || ||||||||||||||||| ||||| || |||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||| || || | |||   ||  ||    |         ||    ||     ||  || | | |   |  ||     ||| |    |||    |||     
AATTTGATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAACCTTGGgtaagcttttgaaggttattaaattctctttgcttcattttgtttcattgcatcatagcctttctttcagtcttagattttaagaattctcattagcata

upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G46420.2 (Arabidopsis thaliana), 5'ss of exon 4
AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactattatgtccat-ttcttttaaatct---
|||||||||||| | || || ||||||||||||| ||| ||||| || || ||||| |||||||  ||||||||||| || ||||| |||||||| || ||||        ||  |  ||   |  | | | | ||||           |  |   ||  | ||| |   ||| |  |||||   |  ||||||| ||| |   
AATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAACATTAGgta--------caatcacttttgtttatttccatatca-----------aagtaacattgtgttagtaacttaccctttatgataacgttcttttgaattttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703971|gb|EE081373.1|EE081373
EST:     GAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGG                         TATGGCAGAAGTTGGAAGAAGAAAATGCTGATTTTTTCAGGGCCTATTACA
genomic: GAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattg ... gttaactcagTATGGCAGAAGTTGGAAGAAGAAAATGCTGATTTTTTCAGGGCCTATTACA