Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTTGCAGAGAGGACTCCCTTCTGGTTCAATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgtttttttttcttcctcgtctgattcttattatttttgaattacccaacttgtatgccttttatcataaaggagagattgatgcaaaagattcgaatgtg...

Basic information

species Vitis vinifera
transcript Vv15s0024g00050.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378329|gb|EC943456.1|EC943456
EST:     ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG                         ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAG
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: gi|122691575|gb|EC980636.1|EC980636
EST:     ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG                         ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAG
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: gi|110376873|gb|EC941950.1|EC941950
EST:     ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG                         ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: gi|161713476|gb|FC063101.1|FC063101
EST:     ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG                         ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAG
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: gi|110394067|gb|EC958495.1|EC958495
EST:     TTCATGCTACTCCTGCTGCTACTGTTGGAGAG                         ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAG
genomic: TTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTTGCAGAGAGGACTCCCTTCTGGTTCAATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgtttttttttcttcctcgtctgattcttattatttttgaattacccaacttgtatgccttttatcataaaggagagattgatgcaaaagattcgaatgtg

- - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaag