Sequence
atgc intronic sequence ATGC exonic sequenceTTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagtttcatgtacccttgttttaaaatctaatatttgttttattattacttggtgagtaaagaattgtatatggatgcacctagaacctgcatgatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
TTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagtttcatgtacccttgttttaaaatctaatatttgttttattattacttggtgagtaaagaattgtatatggatgcacctagaacctgcatgatat--
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TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttctaaagatagtctgttatagtttc-tgcatggtttaacttta-tggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G45470.1 (Glycine max), 5'ss of exon 2
TTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagtttc--atgtacccttgttttaaaatcta-ata--tttgttttattattacttggtgagtaaagaattgta-tatggatgcacctagaacctgcatgatat
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TTGTTAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttctaaagaaagtctgttatagtttctgcatggtttaacttcctgaattttggctctgttgactttagcaatgtgatggccaatgaaaaattct------
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
TTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagt--ttcatgtacccttgttttaaaatctaatatttgttt-tattattacttggtgagtaaagaattgtatatggatgcacctagaacctgcatgatat
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TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctctctcgttatat--ttaacatacatccatttttttttttaattgaaacag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110358495|gb|EC922751.1|EC922751EST: TGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAG GAGTGGACAGTATATATGGGAGGACCATCGCCCTCAATCAGGTGTATGGAA
genomic: TGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagtttca ... tttggaacagGAGTGGACAGTATATATGGGAGGACCATCGCCCTCAATCAGGTGTATGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagtttcatgtacccttgttttaaaatctaatatttgttttattattacttggtgagtaaagaattgtatatggatgcacctagaacctgcatgatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat