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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacatcagcatgactttggtgt...

Basic information

species Vitis vinifera
transcript Vv15s0021g00460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtgtatgatcagatttcaaac-tgatgctattggggttcttccatgttatacatcagcatgactttggtgt
 ||||||||||| ||||| ||||| || ||||  ||||||||||||||  | ||  | ||||| || ||||| || ||||| |||||||| ||||| |||||| |    ||||   |  |    |  ||    |   ||  |||||||    ||||  ||     ||  |||  | | || | |     || |        
GATTACAGAAGCTGGTGCGAACCGTGTCCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGATCATGTTTATGGTCAGgta-tgcactgatgcatgttgactgataactgcttgcatgtgatttcatttatgattataactttgtctttctttttgattctttgatctgtcaag-----

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G038791_T01 (Zea mays), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgta-ataaggtgatagcttctagt--ggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacat-cagcatgactttggtgt-------------
 ||||| ||||| ||||| ||||| || |||| |||||||||||||||| | ||  | ||||| || ||||| || ||||| ||||| || ||||| |||||| ||    |||    | ||| |    || ||   |    | |    | |   || |  |  |||  ||| ||| | |||||  |      |   |||  |||             
GATTACCGAAGCTGGTGCCAACCGTGTCCTTGTTTGTGATCTTCATTCTAGTCAAGCAATGGGATACTTTGACATCCCAGTAGATCACGTTTATGGCCAGgtatatgtactgaagcatgctacttaaatctattaattcctttaagacttag--tgtttatgatggtattcatccttcttataattgttttctatttttcctgtttgatccgtgaag

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtg-tatgatcagatttcaaactgatgctattggggttcttcca-tgttatacatcagcatgactttggtgt
 ||||||||||| |||||||| || || ||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | | ||||     |   | |||| |    ||| ||   ||   | |   |    |||     | ||  | |   | | |  | |||| ||| | |  
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaaca-gatgattatgccatattgtcattacaatataatagcatggaagaaaaaaaacatttaatctattaaactcaaacaaacaaacatgccttggata-

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgata-gcttctagtggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacatcagcatgactttggtgt-------
 ||||||||||| |||||||| || || ||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||     |  || |   ||||     | |   ||  ||   |     ||   |    |||     | ||  |  | | |||  | |||| ||| | |||       
AATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGCCAGgtaacggattattatgtcactagcatatagta-atagcatggaa----gaataaaaagcatttaatctattaaac-tcaaaca--aacatggcttggatgtgttgtat

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacatcagcatgactttggtgt----------
 |||||| |  | |||||| |||| || ||||||||||||||||| || || ||||||||||| || |||||||||||||| |||||||| ||||| ||||||  ||   | |    |  | ||     | ||    ||||  || |    ||     || |   |||||   | || |   ||    || ||||  | |          
GATTACACAGTCTGGTGCAGACCGTGTCCTTGCTTGTGATCTTCACTCCGGACAGTCTATGGGCTACTTTGATATTCCAGTCGATCATGTTTATGGCCAGgtagaaaaaagtttttcttaaatgactcctctgagc-atcaagttcctttttgtgaaaatagactttcttatgtcttcttt-tccttgtg-ctttaatattcatgaacag

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S42_193V6.2 (Physcomitrella patens), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataagg--tgatagcttctagtggt-caatgtgtatgat---cagatttcaaactgatgctattggggttcttccatgttataca---tcagcatgactttggtgt-----------
 || || || || || || ||  |||| || ||||||||||||||||| |||||||| ||||| |||||||| ||| | |||||||| || ||||| ||||| |  | |  |  |||||  || |  | | | ||| || ||     | |     |  || |  | |    |  || |   ||  |     |  |  | |  | || |            
AATCACTGAGGCTGGAGCCAATAGAGTGCTGGCTTGTGATCTTCATTCAGGGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatgattcttagctcgtacttttaccaagtgcattatgtatgggtcgtgcaacgaggtaactttattcttttcgctttgaatgacctttgattaatctcggagccttgtgtgcag

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaa-taaggtgatagcttctagtggtcaat-gtgtatga---tcagatttcaaactgat-gctattggggttcttccatgttatacatcagcatgactttggtgt---------------------------------------------------------------------------
 ||||| ||||| || || ||  ||||  | |||||||||||||| || || ||||| |||||||| ||||| ||| | || |||||||||||||| ||||| |  |   | | |  || || |  |  ||  | | | |   | | |||| ||| | || | ||||    || ||   |||||| |  |  || |  |    |||                                                                           
AATTACTGAAGCTGGGGCCAATAGAGTATTGGCTTGTGATCTTCACTCAGGCCAGTCCATGGGTTACTTTGACATTTCTGTCGATCATGTGTATGGTCAGgtgagcattttaacaagttttattattttattatttttaaaatttaaattttaaaattattgttattcttatttttt--tgttattctccctcaagtgtaacatgttctatttgtgctcggaggaaaattcacatgttttattttaaaggttattgtctaattgggaaaccttgtatgcag

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S152_123V6.1 (Physcomitrella patens), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgat----agcttctagtggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacatcagcatgactttggtgt
 ||||| ||||| || |||||||| || ||  ||||||| || || ||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || ||||       ||    |    ||    || |    |  | ||  | ||  | ||  ||| |       | | |    | |   | |    |     ||| || 
AATTACTGAAGCTGGGGCAAACCGTGTGCTCACTTGTGACCTGCACTCTGGCCAGTCGATGGGCTACTTTGATATTCCCGTTGACCATGTTTATGGCCAAgtaagttatctatctgaattacctgaaagttatgaagcctaattcg-ttgtagac--atgtttcacaattccattgcggctgctcttagctagcttcttgatg-

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ24123 (Selaginella moellendorffii), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacatcagcatgactttggtgt
 || || || || |||||||| || |||||||| ||||||||||| ||||| ||   |||||| || || |||||||| |||||||| || ||||||||||||     || |||  ||       |||| ||      ||   | | |||      || || |   |||| | ||                         
TATAACTGAGGCAGGTGCAAATCGTGTTCTTGCGTGTGATCTTCACTCTGGACAAAGTATGGGGTACTTCGATATTCCTGTTGATCACGTCTATGGACAGgtatgtgcgtcatatttttc-----tcaacgtcaccattcccgtataaaat-----ctctttg--ctctttcttgcag----------------------

upper sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ35181 (Selaginella moellendorffii), 5'ss of exon 4
CATTACAGAAGCGGGTGCAAACCGAGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggtgatagcttctagtggtcaatgtgtatgatcagatttcaaactgatgctattggggttcttccatgttatacatcagcatgactttggtgt
 || || || || |||||||| || |||||||| ||||| ||||| ||||| ||   |||||| || || |||||||| |||||||| || ||||||||||||     || |||  ||       |||| ||  |  ||     | ||||   ||    |||    |||| | ||                         
TATAACTGAGGCAGGTGCAAATCGTGTTCTTGCGTGTGACCTTCACTCTGGACAAAGTATGGGGTACTTCGATATTCCTGTTGATCACGTCTATGGACAGgtatgtgcgtcatatttttc-----tcaacgt-caccattcccgtacaaa--aatctctttg---ctctttcttgcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71874379|gb|DT023434.1|DT023434
EST:     GGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAG                         CCTGTGATACTTGATTATCTTGCAAGCAAAACTATTTGTTCTGATGATTTG
genomic: GGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggt ... tccacgctagCCTGTGATACTTGATTATCTTGCAAGCAAAACTATTTGTTCTGATGATTTG
EST: gi|71874060|gb|DT023115.1|DT023115
EST:     GGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAG                         CCTGTGATACTTGATTATCTTGCAAGCAAAACTATTTGTTCTGATGATTTG
genomic: GGCAGTCTATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGgtaataaggt ... tccacgctagCCTGTGATACTTGATTATCTTGCAAGCAAAACTATTTGTTCTGATGATTTG