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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaattccgctttgttcatatgatcaattcctacaccatcccattccacagttggccctactcaacatttgagacttgatatgcag

Basic information

species Vitis vinifera
transcript Vv14s0219g00280.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g74000.1 (Oryza sativa), 5'ss of exon 4
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaattccgctttgttcatatgatcaattcctacaccatcccattccacagttggccctactcaacatttgagacttgatatgcag
||||||||| |||||||| ||||||||||| || |   | |||||  || | || ||||||||||| ||||| || |||||||| |||||||| ||||||| ||      | ||  | |   ||  |    | |    | |      |  ||      ||  ||    |  |   || | ||||||
GGAGGTCAAGATGGAAGGACCATGCATGATATCTAAATTAATTACAAACATACTTGGAATCAATTGCTGTGTCCTTATGGGTGCTAACATTGCAAATGAGgcaagcatcttctgaacttcccatgcaaagtttctttgtactccctaaaggtgaaaagtaaccagg--tgcacctttcaaatgcag

upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G07410.2 (Glycine max), 5'ss of exon 4
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaattccgctttgttcatatgatcaattcctacaccatcccattccacagttggccctactcaacatttgagacttgatatgcag----------------
||||||||||||||||||||||||||||||||| | ||||||| || |    || |||||||| |||| |||| |||||||||||||||| || ||||||||| ||        ||    |  | | ||  |    | |   |||  |   ||     || |  | |||||    |||  ||                    
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaagaaattagagttttaattttatttttcttgtaatttgaattttctgtttattttatatttggttgttgtaattattattagtgtttgtgcag

upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G23190.1 (Glycine max), 5'ss of exon 5
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaatt---ccgctttgttcatatgatcaattcctacacc-atcccattccacagttggccctactcaaca-tttgagacttgatatgcag----
||||||||| | ||||||||||  ||||||||| |||||||||||  |    |||||||||||||||| |||| ||||||| |||||||| || |||||||||  |        || | |   |  | | |    | ||  |  |||    | | ||     |  |      |||||   ||| | |        
GGAGGTCAAGAAGGAAGGCCCAACCATGATCTCTACTCTCATTACCAAACAACTAGGAATCAATTGTTCTGTTTTAATGGGGGCCAACATAGCAAATGAGgtagctaaatgatattatacgcctttttagtgtaaatacttaggccaaattataattaatattgttttctgctttgatgtttgctgtttgaacag

upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 6
----GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaattccgctttgttcatatgatcaattcctacaccatcccattccacagttggccctactcaacatttgagacttgatatgcag
    ||||||||||||||||||||||||||||||||                                                                                                                                                          
GGATGGAGGTcaaaatggaaggcccatgcatgatctag--------------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 7
GGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTCATTACTGACTTGCTAGGAATCAATTGTTGTGTTCTAATGGGTGCCAACATTGCTAATGAGgtaattccgctttgttcatatgatcaattcctacaccatcccattccacagttggccctactcaacatttgagacttgatatgcag----------------
                                    ||||||  || |    || ||||||||||||| |||| |||||||||||||||| || ||||||||| ||        ||    |  | | ||  |    | |   |||  |   ||     || |  | |||||    |||  ||                    
------------------------------------TCTCATCTCTCAGCATCTGGGAATCAATTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGgtagtttgaagaaattagagttttaattttatttttcttgtaattttaattttctgtttattttatatttggttgttgtaattattattagtgtttgtgcag