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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCATTGGAATTGTTTGTGCTGCATGGTTATCAGCTGCAGTTTGTGTGATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgccctcttatgatgatttatttcatctctattactgtgtgatttttgcatagaaacatcatgattgcacacagtagcgtttaaacacgcatta...

Basic information

species Vitis vinifera
transcript Vv14s0219g00120.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723575|gb|EE101045.1|EE101045
EST:     ATCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|351045861|gb|FQ441046.1|FQ441046
EST:     ATCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|351030795|gb|FQ438633.1|FQ438633
EST:     TCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCG-TTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG
genomic: TCATAGCTTTGCCAAACCATTCTTGGCTTTGGCT-GATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|110699274|gb|EE076127.1|EE076127
EST:     ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|294966259|gb|GW837510.1|GW837510
EST:     ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|349820300|gb|FQ403916.1|FQ403916
EST:     ATCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|349809992|gb|FQ398617.1|FQ398617
EST:     ATCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCCG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|110696243|gb|EE075180.1|EE075180
EST:     ATCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCACAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|110724366|gb|EE100141.1|EE100141
EST:     ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
EST: gi|34549515|gb|CF517747.1|CF517747
EST:     ATCATAGCTTTTCCAAACCATTCTTGGCTTTGGCTCATTTCAGTCTTTAA                         CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG
genomic: ATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgcc ... catggtgcagCACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCATTGGAATTGTTTGTGCTGCATGGTTATCAGCTGCAGTTTGTGTGATCATAGCTTTGCCAAACCATTCTTGGCTTTGGCTGATTTCAGTCTTTAAgtaagatgccctcttatgatgatttatttcatctctattactgtgtgatttttgcatagaaacatcatgattgcacacagtagcgtttaaacacgcatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaa