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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTgtgagtgatcaccaatcttgatgttgcacattttggttgttattttaatgctaatatcatctactactttgctaagcag

Basic information

species Vitis vinifera
transcript Vv14s0128g00430.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 4
TATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTgtgagtgatcaccaatcttgatgttgcacattttggttgttatttta-atgctaatatca--tctactactttgctaagcag
||  ||||| || ||||| ||| | |||||| |  |||| |||||||||||||||||||| |||||||| |||||||| |||||  |||||||||||||||| |||  | |   | |  |    |  || |||     || |||||| |||| || ||||  |  |||| ||   | | |||
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTgtaagtt-ttagttaccgagccactatactttt-----gtaattttatatgccaa-atcagtttcactaattcattcaacag

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 4
TATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTgtgag---tgatcaccaat---cttgatgttgcacattttggttgttattttaatgctaatatcatctactactttgctaagcag
||  ||||| || ||||| ||| | |||||| |  |||| |||||||||||||||||||| |||||||| |||||||| |||||  | |||||||||||||| ||   |  | ||  |    ||  |  |||   ||||    ||  |  | | |   | | |  |  |||| ||   | | |||
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTgtaagttttagttactgagccactatactttggtgatttcatatgccaaatcactttcagtct--ttcactaattcattcaacag

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 5'ss of exon 4
TATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTgtgagtgatcaccaatcttgatgttgcacattttggttgttattttaatgctaatatcatctactactttgctaagcag-
||  || ||||| || || || |||||||| ||| | |||||||||||||||||||| || || ||||| |||| |||||||||| | || |||||  |||| |||      |  |    |   |      |||   ||  || || ||| |  || |||||   |  |   | |  |  
TACGGTGAGGGAAGATGAAACTTTGAATATCTTGCTTGAATTTGTTCCTGGTGGATCTATATCTTCACTCTTGGAGAAATTTGGAGCCTTTCCTGAATCTgtaagtcgct--ctgttgaaaaactattgggtttc-ctgaaatgttgatgatggtaacatctttaaactgtttgaaaaag