Sequence
atgc intronic sequence ATGC exonic sequenceCTGGAAGGAGGTGCAGACATATGGAGACATTCAGCTGATGCCTTTTGTTGACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttccacctccttctggtgacaaagaaagtttatcatatgtgctcatttcctctttttaatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G12030.1 (Glycine max), 5'ss of exon 4
CTGGAAGGAGGTGCAGACATATGGAGACATTCAGCTGATGCCTTTTGTTGACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttccacctccttctggtgacaaagaaagtttatcatatgtgctcatt----tcctctttttaatag
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GTGGAGAGAAGCACAAACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACTTGGAAATCTTTAGCAATCTGCATTTTTGGGgtaatgtcttgtctctttactttgatttggagactctttccttagc-ctcattgaaatgaactcttcaacag
upper sequence: Vv14s0108g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G05860.1 (Glycine max), 5'ss of exon 5
CTGGAAGGAGGTGCAGACATATGGAGACATTCAGCTGATGCCTTTTGTTGACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttccacctccttctggtgacaaagaaagtttatcatatgt---gctcatttcctctttttaatag
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GTGGAGAGAAGCACGGACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgatttgtctcttactt-tgatttggagaatctctccttagcctcattgaattgatctcttcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859857|gb|DT008912.1|DT008912EST: ACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGG ACTGAGGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTT
genomic: ACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttcc ... tttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGAAGGAGGTGCAGACATATGGAGACATTCAGCTGATGCCTTTTGTTGACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttccacctccttctggtgacaaagaaagtttatcatatgtgctcatttcctctttttaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA