Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacag

Basic information

species Vitis vinifera
transcript Vv14s0108g00010.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G49070.1 (Glycine max), 5'ss of exon 4
CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacag
 | ||    ||  | || ||  |||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||| ||||||||  || |        ||   ||   ||    |     | | |  |  |     || | ||   || |   |   |||   |  | |||| ||||| | |   |   |    | |  | || |   |  | |    |||| |||   |          
-TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaagagatagtcaaccattttgcataacaatctttcaaaatctaatggaaatttaggtgttgagtaaactatgtagtttgagaaagcaatctcattaaaactctctaaaacatctctaaagcagtaatttgtattctgttttatggaacag---------

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G37570.1 (Glycine max), 5'ss of exon 4
CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcag---gggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgat-ttctaattttttggtgaatt-tatcacag--------------
|| ||    ||  | || ||  |||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||| ||||||||  || |        ||   ||   |||   |||      |||||  |     || || | ||   || ||  |   |||   |  | |||| ||||| | |   |   ||| |  |  ||   || ||  | |||   | |  | || | || |||                   
CTCTTCACAACTATCACTGTTAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGgtaag--atagtctaccattttgcataacaaggt-ttgaaaatctaatgcaaatttaggtgtgtcgagcaaactgtgtagtttgagaaagcaatctcattaaaactctctaaaaacctatttaactcctgcatcctattcctttatggtagtaatttgtattgtctgttttatggaacag

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G02380.1 (Glycine max), 5'ss of exon 4
CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacag
|||||    ||  | || ||  |||| ||||||||||| || ||| |||| |||| ||||| ||||||||| ||||||||||| ||||||||      ||   |   || | |  || |     |||| |||  |  |  |  |  ||| ||  | |   ||         ||  |||| |   |                                                               
CTTTTCACAACTATCACTGTCAATGAGCCTGCTCCTGGTCTCAAGACTATTTTTAGCTTTAGAGTTCCTGATCAAAGGTCTGGAAAGgtaag------ataagtcagtcattttgtatgggaaggtttgattcttcaccagaaaccatg-atttactaaatttgagaa---acttcatcatgaaacag------------------------------------------------------------

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G05130.1 (Glycine max), 5'ss of exon 4
CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacag
||| |    ||  | || ||  |||| ||||||||||| || ||| |||| |||| ||| | ||||||||| ||||||||||| ||||| ||  |  |    |   ||  ||| | |  |   ||||| |||  |  ||||  |  |||  |        ||  |   |  ||| |||| |   |                                                               
CTTCTCACAACTATCACTGTCAATGAGCCTGCTCCTGGTCTCAAGACTATTTTTAGCTTCAGAGTTCCTGATCAAAGGTCTGGAAAGgtgagataa-gtcagtcattttgtatgtgagaa---tgtttgattcttcacaggaaaacatgattaactaaatttgagaaacaaacctcatcatgaaacag------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584194|gb|DV221153.1|DV221153
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71856250|gb|DT005305.1|DT005305
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110377742|gb|EC942827.1|EC942827
EST:     CAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: CAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71854808|gb|DT003863.1|DT003863
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110397375|gb|EC963110.1|EC963110
EST:     TTAACTTTAAAGTTCCTGACAAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: TTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|294966303|gb|GW837554.1|GW837554
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110702383|gb|EE081035.1|EE081035
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71877395|gb|DT026450.1|DT026450
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|77584446|gb|DV221292.1|DV221292
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110685633|gb|EE062525.1|EE062525
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110380238|gb|EC945486.1|EC945486
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|161708366|gb|FC057042.1|FC057042
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAA
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAA
EST: gi|71854973|gb|DT004028.1|DT004028
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110694680|gb|EE071996.1|EE071996
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71855582|gb|DT004637.1|DT004637
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110703939|gb|EE081313.1|EE081313
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71874996|gb|DT024051.1|DT024051
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71865784|gb|DT014839.1|DT014839
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|161715473|gb|FC069049.1|FC069049
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|77588481|gb|DV223453.1|DV223453
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|352781706|gb|FQ469004.1|FQ469004
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71856067|gb|DT005122.1|DT005122
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAG
EST: gi|110693440|gb|EE069671.1|EE069671
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110691473|gb|EE069615.1|EE069615
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71875650|gb|DT024705.1|DT024705
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|352782173|gb|FQ470075.1|FQ470075
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71875894|gb|DT024949.1|DT024949
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71859244|gb|DT008299.1|DT008299
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71859018|gb|DT008073.1|DT008073
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110693844|gb|EE070431.1|EE070431
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71876956|gb|DT026011.1|DT026011
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71857546|gb|DT006601.1|DT006601
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTA
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTA
EST: gi|71856209|gb|DT005264.1|DT005264
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|32268425|gb|CD717584.1|CD717584
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110701982|gb|EE080178.1|EE080178
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|161710352|gb|FC058989.1|FC058989
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAA-GGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71858139|gb|DT007194.1|DT007194
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110376066|gb|EC941106.1|EC941106
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|77583183|gb|DV220629.1|DV220629
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|37184727|gb|CF604081.1|CF604081
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacag

- - - - - - - - - - - - - - - - - - -  CTGAAG