1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGGAAATGAAAGTGAAGCTTGTTACAGTGTGCCCCGGGCTTCTCATGGCCCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAGgtaaagacactaatttcatctttacttagatgttggtgaagaatgaggtgaatgggatccattcctatcagccccagaaagccttgatgttgctttgttt...
species | Vitis vinifera |
transcript | Vv14s0083g00320.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCATCATTCC-AAATGCTCATACTGAAACCTCTGTACC-TATCTTAAAG GTGGGCGGATGATGCTACAACGAAGTGTCTTGGCEST: gi|27580474|gb|CB003169.1|CB003169
genomic: CCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAGgtaaagacac ... tcatgtgcagGTGGGCGGATGATGCTACAACGAGGTGTCTTGGC
EST: CCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAG GTGGGCGGATGATGCTACAACGAGGTGTCTTGGCAACCAATGATATAAGCAEST: gi|110371210|gb|EC935047.1|EC935047
genomic: CCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAGgtaaagacac ... tcatgtgcagGTGGGCGGATGATGCTACAACGAGGTGTCTTGGCAACCAATGATATAAGCA
EST: CCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAG GTGGGCGGATGATGCTACAACGAGGTGTCTTGGCAACCAATGATATAAGCA
genomic: CCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAGgtaaagacac ... tcatgtgcagGTGGGCGGATGATGCTACAACGAGGTGTCTTGGCAACCAATGATATAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGAAATGAAAGTGAAGCTTGTTACAGTGTGCCCCGGGCTTCTCATGGCCCCATCATTCCCAAATGCTCATACTGAAACCTCTGTACCATATCTTAAAGgtaaagacactaatttcatctttacttagatgttggtgaagaatgaggtgaatgggatccattcctatcagccccagaaagccttgatgttgctttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatggga