1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAGCTAGTTTTGGGGGCTCTAACATTGATCCAACCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatcattgatgaactgaaacacttaaattatcattctcaagactcccttactgagtcatagtatttcatttctcccaataaatag
species | Vitis vinifera |
transcript | Vv14s0068g02040.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGCATGGGAAGACAAAAAATGCAAAGGTGAATCGAGGTTTCCTGCTCAG GTAAGGGTCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTEST: gi|33405079|gb|CF210706.1|CF210706
genomic: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatc ... caataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTT
EST: CCGCATGGGAAGACAAAAAATGCAAAGGTGAATCGAGGTTTCCTGCTCAG GTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTEST: gi|110396191|gb|EC961872.1|EC961872
genomic: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatc ... caataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTT
EST: CCGCATGGGAAGACAAAAAATGCAAAGGTGAATCGAGGTTTCCTGCTCAG GTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTEST: gi|110384179|gb|EC948598.1|EC948598
genomic: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatc ... caataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTT
EST: CCGCATGGGAAGACAAAAAATGCAAAGGTGAATCGAGGTTTCCTGCTCAA GTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTEST: gi|110687073|gb|EE064163.1|EE064163
genomic: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatc ... caataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTT
EST: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAG GTAAGGATCCGTGTTANGAACCTATGNCA-GGCATTGGAAGAAGATGCTTTEST: gi|110687425|gb|EE064823.1|EE064823
genomic: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatc ... caataaatagGTAAGGATCCGTGTTAGGAACCTATG-CAAGGCATTGGAGGAAGATGCTTT
EST: CCGCATGGGAAGACAAAAAATGCAAAGGTGAATCGAGGTTTCCTGCTCAG GTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTT
genomic: CCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatc ... caataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCTAGTTTTGGGGGCTCTAACATTGATCCAACCGCATGGGAAGACAAAAAATGCAAAGGCGAATCGAGGTTTCCTGCTCAGgtaaaatatcattgatgaactgaaacacttaaattatcattctcaagactcccttactgagtcatagtatttcatttctcccaataaatag
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG