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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacagcagaattttccttctctattccattcttttgcag

Basic information

species Vitis vinifera
transcript Vv14s0068g01530.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 4
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacag---cagaattttccttctctattccattcttttgcag
 ||||| |||||||| ||| ||||| ||||||||||||||||| |||||||||| |||||||| ||||| || ||||||||||| || ||||||||||||||||   |  |   ||  |||     | ||   ||||   ||  ||||     || |||    ||||   |      || |||   | | | | |  | || || |||
AACCCCAGCCTCCATAGTGTTAATAATTTACACCTTCATATCAATGTGGTTTGTTGGTGGCCTGACTGCCTTTCATTTATATCTTATAAGTACAAATCAGgtaatcagtcc---tttttaaaatctttatatagtagtataa--tttaaaattaagtatctatcctactggacttgcaactttatatttgtgtccattactgttacag

upper sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 4
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacag---cagaattttccttctctattccattcttttgcag
 ||||| |||||||| | | ||||| | ||||||||| ||||| |||||||||| |||||||| ||||| || ||||||||||| || ||||||||||||||||    |    |||  |||     | ||   ||||    ||||| | || ||  |||    ||||   |      || |||   | | | |||  | || || |||
AACCCCAGCCTCCATAGGGTTAATAATATACACCTTCGTATCAATGTGGTTTGTTGGTGGCCTGACTGCCTTTCATTTATATCTTATAAGTACAAATCAGgtaat---cattcctttttaaaatctttatatagtagt-ataatttaaagttaagctatctatcctacaggacttgcaactttatatttgtgttcattactgttacag

upper sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 4
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacagcagaattttccttctctattccattcttttgcag
 || || |||||||| ||| | ||| ||||||||||||||||| |||||||||| ||||| || ||||| |||||||| ||| |||| ||||| |||||||||| |  ||  || |  |||| | |  || || ||||     ||| || |  | | |   | | ||   ||   ||| | |||                     
AACTCCAGCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaa-gccctgttcgttttaat-ccac-atgctctagct----tttcagatgtatacagctt-catatttgctccattattcttgcag-----------------

upper sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G08200.1 (Glycine max), 5'ss of exon 4
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacagcagaattttccttctctattccattcttttgcag
 || ||  ||||||| ||| | ||| ||||||||||||||||| |||||||||| |||||||| ||| | |||||||| ||| |||| ||||| || ||||||| |  |   |  || |||| |    || || |||                                                                    
AACTCCATCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGCCTCACTACCTTCCATTTGTATTTGATAAGTACCAAGCAGgtaa-gcaccatttgtcttaatacac--atgctctag--------------------------------------------------------------------

upper sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 5'ss of exon 4
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacagcagaattttccttctctattccattcttttgcag
 || |||||||||||||| |||||| | ||||| ||||||||| |||||||||| |||||| |||| |  |||||||||||||| ||||| || || ||||||   |   |  |   | ||| |      ||| |    |||        |||   |||  |   ||||    || || || || |   | |             
AACTCCTGCCTCCATTGTTCTAATAATATACACATTCATATCAATGTGGTTTGTTGGTGGCTTAACAGTTTTCCATTTATATCTCATCAGCACGAACCAGgtat--gttgcgaccatccaatccccaccctctcttaaggaa--------tcacggtatc-tctgtaaccattgatttatctttgttcttgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699641|gb|EE076815.1|EE076815
EST:     TTGTCGGTGTCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAG                         ACTACCTATGAGAATTTCAGATACCGATATGATCGACGAGCCAACCCCTAC
genomic: TTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggct ... tcttttgcagACTACCTATGAGAATTTCAGATACCGATATGATCGACGAGCCAACCCCTAC