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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGTTTTGTTAATGATGGGAAAAGTGCAGTTTGATCTTCAGAAACTTGTTGATAGCTATgtgggtgtggattgttatgcagtcaactttaaacacacagtcattttagaatattgccttttactttaacctagtaattacatgttttttgtccttcag

Basic information

species Vitis vinifera
transcript Vv14s0068g01470.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G26880.2 (Glycine max), 5'ss of exon 4
GCAAAGTTTTGTTAATGATGGGAAAAGTGCAGTTTGATCTTCAGAAACTTGTTGATAGCTATgtgggtgtggattgttatgcagtcaactttaaacacacagtcattttagaatattgccttttactttaacct----agtaattacatgttttttgtccttcag
| |||||||||   ||| | ||||  |||||| |||| |||||||| |||||||||||||||||| |  |  |||    || |  |   ||||         |  |  | ||  ||||    ||     ||  |      | ||| |||   || ||| | ||||
GTAAAGTTTTGGGGATGCTTGGAAGTGTGCAGCTTGAACTTCAGAAGCTTGTTGATAGCTATgtgagcttttatttgggtgtaaccttttttattgctttgcttttccttgagcattgttcattcacaaaatgtttattttgattccat-ccttctgttcctcag

upper sequence: Vv14s0068g01470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G05610.1 (Glycine max), 5'ss of exon 3
GCAAAGTTTTGTTAATGATGGGAAAAGTGCAGTTTGATCTTCAGAAACTTGTTGATAGCTATgtgggtgtggattgttatgcagtcaactttaaacacacagtcattttagaatattgcct-tttactttaacct----agtaattacatgttttttgtccttcag
| |||||||||   ||| | ||||  |||||| |||| |||||||| |||||||||||||||||| |  |  |||    || |  |   ||||            |  | ||  ||||     |||    ||  |      | |||  ||  ||| ||| |  |||
GTAAAGTTTTGGGGATGCTTGGAAGTGTGCAGCTTGAACTTCAGAAGCTTGTTGATAGCTATgtgagcttttatttgggtgtaaccttttttattgctttgagtttccttgagcattgttcacttaaaaaaatgtttattatgattctatcctttctgttccccag