Sequence
atgc intronic sequence ATGC exonic sequenceCCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagctcctctcctatgaatgatgttgatgggagcttagagattagctgattttttatgcctataatcctttggaattcctggcaaacttaaaaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 4
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgaga---agctcctctcctatgaatgatgttgatgggagcttagagattagctgattttttatgcctataatcctttggaattcctggcaaacttaaaaca
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CCCATATATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCGCTGGCTGTTGCAGCACTTAACCCTGATATTGATCTTGTACTAATTTTGGCGAACCCAGgtaacttttagtgacgtagataaaatttattttcctggattttattgttccagacaattcaacaccattaacatgactgaaagtaagagcttaactttag---
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G05580.1 (Glycine max), 5'ss of exon 4
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagctcctctcctatgaatgatgttgatgggagcttagagattagctgattttttatgcctataatcctttggaattcctggca-aacttaaaaca---------------
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CCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGCACTGGCTGTTGCAGCACTTAGCTCTGATATTGATCTTGTACTGATTTTGGCGAACCCAGgtaa------------cttttagtgatgtagataagattttttctcttgggt--tttattgttccagaaaa--ttcagcaccataaacatgactgaaagtaagagtttagctttag
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 4
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagctcctctcctatgaatgatgttgatg-----ggagcttagagatt-agctgattttttatgcctataatcctttggaattcctggcaaacttaaaaca
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CCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGCACTGGCTGTTGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgt---aacttttagtgatgaagataagatttattctcttggattttattgttccagacaattcagcaccattaacatgactgaaagtaaaagtttaactttag---
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtga-gaagctcctctcctat------gaatgat---gttgatgggagcttagagattagctgattttttatgcctataatc--ctttggaattcctggcaaacttaaaaca
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CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30131386|gb|CB916725.1|CB916725EST: TGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAG CTACATCTTTCAGCAAGTCACCACTGCAATCTCTAATGCCTCTATTGAGTC
genomic: TGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagct ... gttttggcagCTACATCTTTCAGCAAGTCACCACTGCAATCTCTAATGCCTCTATTGAGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagctcctctcctatgaatgatgttgatgggagcttagagattagctgattttttatgcctataatcctttggaattcctggcaaacttaaaaca
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcaaac