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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTTTCTCATCCAGCTGACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGCGCAACAGTTGGTGATgtgagtgctctactttaagatgtttccttggccttctgtattccttcatgcccacatgtttatgttgttttgaacttttgttctctag

Basic information

species Vitis vinifera
transcript Vv14s0068g01260.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G14040.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTTTCTCATCCAGCTGACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGCGCAACAGTTGGTGATgtgagt-gctctactttaagatgtttccttggccttctgtattccttcatgcccacatgtttatgtt-gttttgaacttttgtt-ctctag------------------------------------
 || || || || || || || |||||||| || |||||||||||||| |||||||| || || ||||||||||| |||||||| ||||| ||||| ||||| |||  || |  || || |   |  | |     |  | ||  ||          |  | |||    | | |  | || |||| |  |||                                    
CGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCGTTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGATgtaagtcactatgtttgaatacaatagcctaatgcta-gaatggctgtggtttggtagttgtatacaagctattgatttctgttacggtagaaataatatttaatgtttgtaaatgacatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402024|gb|CF207651.1|CF207651
EST:     ACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGCGCAACAGTTGGTGAT                         GCTGTGAAGAACCTTGGATTGTGGGATCNCTTCACCCGGGGGCTTCCCCTG
genomic: ACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGCGCAACAGTTGGTGATgtgagtgctc ... tgttctctagGCTGTGAAGAACCTTGGATTGTGGGGTCTCTTCACCCGGGGGCTTCCCCTG
EST: gi|110366072|gb|EC929727.1|EC929727
EST:     ACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGTGCAACAGTTGGTGAT                         GCTGTGAAGAACCTTGGATTGTGGGGTCTCTTCACCCGGGGGCTTCCCCTG
genomic: ACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGCGCAACAGTTGGTGATgtgagtgctc ... tgttctctagGCTGTGAAGAACCTTGGATTGTGGGGTCTCTTCACCCGGGGGCTTCCCCTG
EST: gi|110685233|gb|EE063420.1|EE063420
EST:     ACAATCTTGTCTCCTTCTTCAACAATGCTAAGGGCGCAACAATTGGTGAT                         GCTGTGAAAAACCTTGTATTGTGGGGTCTCTTCACCCGGGGGCTTCCCCTG
genomic: ACAATCTTGTCTCCTTCCTCAACAATGCTAAGGGCGCAACAGTTGGTGATgtgagtgctc ... tgttctctagGCTGTGAAGAACCTTGGATTGTGGGGTCTCTTCACCCGGGGGCTTCCCCTG