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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAAAAGCAACTTCAGGCTAACAACAGATGATGAGGTTGAGATTGCACTTTCTGGGCAATATCGTCTGAATCTTCCTATCATTGTTGATGAATCTAAGgtatgatttatctgaataaagtatagatacacactgaaattagatacatgcatgtatgcctataaacacattcacttttgtctttagagatttcatttgtgttttacatctgctgatcttagtgttcacttttttcctgaatgtag

Basic information

species Vitis vinifera
transcript Vv14s0068g00980.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 4
GGATAAAAGCAACTTCAGGCTAACAACAGATGATGAGGTTGAGATTGCACTTTCTGGGCAATATCGTCTGAATCTTCCTATCATTGTTGATGAATCTAAGgtatgatttatctgaataaagtatagatacaca-ctgaaattagatacatgcatgtatgcctataaacacattcacttttgtctttagagatttcatttgtgttttacatctgctgatcttagtgttcacttttttcctgaatgtag
| | |||||||| ||||   ||  | ||||||||||||||||| |||| | |||||| |||||||  ||||||||||| ||||  ||||||||| | |||||     |  |||   |  ||  |   | |  | || ||| |   |  ||      ||     |  | |  ||   ||||     |  ||                                                         
GCAAAAAAGCAATTTCAACATATTATCAGATGATGAGGTTGAGCTTGCTCATTCTGGACAATATCTGCTGAATCTTCCCATCAAAGTTGATGAAGCAAAGgttaacatcctctccctccaggctgtgtcctaatctaaaaatcattggatttgacaatattattgtaaaatttgttttttactggtgcag---------------------------------------------------------

upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G011136_T03 (Zea mays), 5'ss of exon 4
GGATAAAAGCAACTTCAGGCTAACAACAGATGATGAGGTTGAGATTGCACTTTCTGGGCAATATCGTCTGAATCTTCCTATCATTGTTGATGAATCTAAGgtatgatttatctgaata-aagtatagatacacactgaaattagatacatgcatgtatgcctataaacacattcacttttgtctttagagatttcatttgtgttttacatctgctgatcttagtgttcacttttttcctgaatgtag
||| || |||||||||| | |   | ||||||| ||| |||| ||||| |  |||||  |||||    |||||||||| ||||  ||||||||||||||||| |||||| | |  | | ||  ||  | | | ||| |  | |  ||||||  |       | |  ||  ||  | ||       | || ||                                                       
GGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttttttttacagaaaaattaaaatagacttag-taacttacatgactagtattttgttgacg-atctatttgctaaccttgaaatgcag---------------------------------------------------

upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G13940.1 (Arabidopsis thaliana), 5'ss of exon 11
GGATAAAAGCAACTTCAGGCTAACAACAGATGATGAGGTTGAGATTGCACTTTCTGGGCAATATCGTCTGAATCTTCCTATCATTGTTGATGAATCTAAGgtatgatttatctgaataaagtatagatacacactgaaattagatacatgcatgtatgcctataaacacattcacttttgtctttagagatttcatttgtgttttacatctgctgatcttagtgttcacttttttcctgaatgtag
||| || ||||||||||   | | |||  |||| ||  |  |  | || || ||||  ||||||||||| |||||||||||  ||||| ||||| ||||||||  |  ||    || ||  ||   ||   ||   | |||   |      ||| |  | |    | |  |||  | |||   || ||  |                                                       
GGAGAAGAGCAACTTCAAAGTGATAACTAATGAAGAAATACAAGTAGCCCTCTCTGCTCAATATCGTCTCAATCTTCCTATTGTTGTTAATGAAGCTAAGgtactacctac---aacaatataacaatcttcaacaagatt---tttggaaatgaaatcttc---ataagttctatattgatatttgatgtag-----------------------------------------------------