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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACATCGATCAGTACAACATATATGCTCCTCCTTGCAACAATTCAGATGGCAGTGGCGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGgtatttttttctttaacacaatgagattatttttataatcatacatatgaaaattctcatctctttctccttccttggcctgtatattctcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00260.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G50170.1 (Glycine max), 5'ss of exon 4
AAACATCGATCAGTACAACATATATGCTCCTCCTTGCAACAATTCAGATGGCAGTGG------CGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGgtatttttttctttaacacaatgagattatttttataatcatacatatgaaaattctcatctctttctccttccttggcctgtatattctcag--------------
       |||||||||||||| ||||||||||| |||||||| || ||||| ||| |       |||| |||||  || || || || ||||| ||| | |||  |||||||  || |  | | || |     ||| |     |   ||   || ||  || |  | |  |  |  |  |||| |   | |  ||| |               
-------GATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTAGTAGCTCTGCCAACCGCCGCACCATGCGTTTACCTCACCGACCCCATGTGGtatttaattttccatc-cactactgctatct--gccactgta---attaattttttttttttataattatgtcttgtcacatcttctcttaagaaggaacatgtta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30255072|gb|CB971519.1|CB971519
EST:     GCAGTGGCGCCACCCGCCAGACTATTCGGTTGCCTCATCGATCTCATAGG                         ATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG
genomic: GCAGTGGCGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGgtattttttt ... atattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG
EST: gi|110686749|gb|EE064741.1|EE064741
EST:     GCAGTGGCGCCACCCGCCAGACTATTCGGTTGCCTCATCGATCTCATAGG                         ATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG
genomic: GCAGTGGCGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGgtattttttt ... atattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG