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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCCCAGTGAAGCCTCCCACTGTTGCACCAAAGCCTCCTGTGCCACCAGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttcttccctatgataggataaaatctgctgagcctttttcatctttttcatctttcttggttaatattctgagaatgtgttgtgattgtcgtctgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01790.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384040|gb|EC948454.1|EC948454
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|33403022|gb|CF208649.1|CF208649
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCCCTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|33402934|gb|CF208561.1|CF208561
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|110688487|gb|EE067095.1|EE067095
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGACAAGATTGG                         ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|77580932|gb|DV219395.1|DV219395
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCACTATGTGATCAAAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|110710595|gb|EE087096.1|EE087096
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGACAAGATTGG                         ACTGCGTCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|110377941|gb|EC943044.1|EC943044
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|71868020|gb|DT017075.1|DT017075
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: gi|110686807|gb|EE064863.1|EE064863
EST:     AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG                         ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTCCCCAGTGAAGCCTCCCACTGTTGCACCAAAGCCTCCTGTGCCACCAGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttcttccctatgataggataaaatctgctgagcctttttcatctttttcatctttcttggttaatattctgagaatgtgttgtgattgtcgtctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA