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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCAAAAGTGGTTCATTGAACATTCGAACACCTTGGTGgtaagaactacaaactgatttcaactaggtcattatatatatgcaacatggatatgcctgattttgaacatctttattactaatttgatcacataaatggtggtgtatatataaatatgaag

Basic information

species Vitis vinifera
transcript Vv14s0066g01670.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 4
AATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCAAAAGTGGTTCATTGAACATTCGAACACCTTGGTGgtaagaactacaaactgatttcaactaggtcattatatatatgcaacatggatatgcctgattttgaacatctttattactaatttgatcacataaatggtggtgtatatataaatatgaag
||||||| ||||||||||||||||||||||||||||| ||  || | ||||| |||| ||| ||||||   || || |  ||||| || |||||||||||||||||  |   |  |  |||   ||  |  || |||| |  |  |  | |   ||| || |   ||           | |    |  |   |||  ||||    | ||             
AATGCCCTCTCAAATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCAAATCCGGATCGTCAAACATCCGTACACCTTGGTGgtaagatttt--attttttttgtgcttagcaatgatatctgcggcatttag---tgcttggtc--gatagagagagccaatggccttgtgctata--tggtaacttgta-------------

upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 4
AATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCAAAAGTGGTTCATTGAACATTCGAACACCTTGGTGgtaagaactacaaactgatttcaactaggtcattatatatatgcaacatggatatgcctgattttgaacatctttat-tactaatttgatcacataaatggtggtgtatatataaatatgaag
||||||| |||||||||||||| |||||||||||||| ||  || | ||||| |||| ||| || |||   || ||||  ||||| || |||||||||||||||||  |  ||      |||   || |  ||||||| ||||      | |  ||||| | ||     |||      ||  ||     |||||  |    |                     
AATGCCCTCTCAAATCTTTCAAATTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATTAAATCCGGATCATCAAACATCCGTACACCTTGGTGgtaagatttttaa------ttctcttaagcaattatatctatggtg-gcgcacgtgcctcaattaatctatcaaaggatataaagaaactcacactaccaataaaac----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717077|gb|FC066549.1|FC066549
EST:     GGGTTCTATGATATCAAAAGTGGTTCATTGAACATTCGAACACCTTGGTG                         GGATGGAAGCGCGATATATGGGAGCAATGAGAAGCAGTTGCA
genomic: GGGTTCTATGATATCAAAAGTGGTTCATTGAACATTCGAACACCTTGGTGgtaagaacta ... aaatatgaagGGATGGAAGCGCGATATATGGGAGCAATGAGAAGCAGTTGCA