Sequence
atgc intronic sequence ATGC exonic sequenceATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcatttcaccatcatttatggtattgtttttagttcattcagctttcttgttctttgttcattattatgactga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 4
ATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcatttcaccatcatttatggtattgtttttagttcattcagctttcttgttctttgttcattattatgactga-----
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GTTCGAAGAGTGGAACCAACTGCTCCTGAGTCTGGATGCCTGCAACCATCAGATATTATTCTTAGCTTCGATGGTATTGACATTGCCAATGATGGTACAGgtcagtcgcactttctcaaaccttgaacttttgac--tcttttctggaatggtgtttgttgcatccaa-tgccctgtaattt--tgataagtgcacctcatacat
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G144501_T02 (Zea mays), 5'ss of exon 4
ATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcatttcaccatcattta-tggtattgtttttagt--tcattcagctttcttgttctttgttcattattatgactga------------------------------------------------------------------------
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GTTAGGAGGGTGGAGCCCACGGCTCCAGAATCTGGATGCCTACAACCGTCTGATATTATTCTTAGCTTTGATGGTGTTGACATTGCTAATGATGGAACAGgt--tagttgtagttctgtagtttatgaatattgttgtttttcagctcaactgtttgcagtgctcgacaaggcgccgttccgtatccgcataggcatgcttatgcgctagatgacggggtactgtggagcctagggggtaggcgatatatagtcggttcctgtcggccgcggcag
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 5
ATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcat-ttcaccatcatttatggtattgtttttagttcattca-gctttcttgttctttgttcattattatgactga---
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ATACGAAGGGTTGAGCCAACTGCTCCTGAATCTGGATGTCTCGAACCTTCTGATATCATCCTTAGCTTTGATGGTATTGATATTGCCAATGATGGTACAGgtta-gcccttgcttcacatgactggatatgctaattgtcaccttt----ttatatctaatttgtctgcattgtcataagtgttatatcatattacaagtctgta
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC212112.4_FGT002 (Zea mays), 5'ss of exon 4
ATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcatttcaccatcatttatggtatt-gtttttagttcattcagctttcttgttctttgttcattat-tatgactga-
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GTTAGAAGGGTGGAGCCCACTGCTCCAGAATCTGGATGCCTACGACCATCTGATATTATTCTTAGTTTCGACGGTGTTGACATTGCTAATGATGGAACAGgttagttgtagcttcta-gtttatgaatatgttttt-tcagctaaactgttagcatgtgatgcact-attttgctgtataaaagcgcaacgtatgtgtcaagt
upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 4
ATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcatttcaccatcat-ttatggtattgtttttagttcattcagctttcttgttctttgttcattattatgactga--
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ATCAGAAGAATTGAACCCACTGCTCCAGAATCTCATGTTCTGAAGCCATCTGATGTAATTCTCAGCTTTGATGGGGTCAATATTTCGAATGATGGAACAGgtaatctaccttgtttttactcagtaacaaataatgattacgttaagatgatttatgcatgccat---attcccatgtgctttgttttgtatagttaaacaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34546836|gb|CF515068.1|CF515068EST: TGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAG TTCCATTTAGGCATGGAGAGCGCATTGGTTTCAGTTACCTTGTTTCTCAAA
genomic: TGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaa ... aaaattgcagTTCCATTTAGGCATGGAGAGCGCATTGGTTTCAGTTACCTTGTTTCTCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAGAAGAATTGAGCCTACAGCTCCTGAGTCTCATGTTCTGAAGCCATCTGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCCAATGATGGAACAGgtaacaaaaatctttcacatttttgtgcatttcaccatcatttatggtattgtttttagttcattcagctttcttgttctttgttcattattatgactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA