1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TACTCGAGTCAAATCTGCTGATGTGAGGCGGAAGACGCTACTAACAGCAACTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGGgtattgaaaactgatctttcaacagtcaattaccttgtagtgcatcagataggcaagatcttttcgcttatggttaatccctataagagatatggatttt...
species | Vitis vinifera |
transcript | Vv14s0066g01100.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCCACAGGTGCTCGG GCATTGCAGCTTGAAGAATCTGGAGTGGCTGGATCAGATGCTGAEST: gi|110710925|gb|EE087534.1|EE087534
genomic: -TGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGGgtattgaaaa ... ttatgtatagGCATTGCAGCTTGAAGAATTTGGAGTGGCTGGATCAGATGCTGA
EST: CTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGG GCATTGCAGCTTGAAGAATTTGGAGTGGCTGGATCAGATGCTGAAAATGTGEST: gi|110686783|gb|EE064815.1|EE064815
genomic: CTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGGgtattgaaaa ... ttatgtatagGCATTGCAGCTTGAAGAATTTGGAGTGGCTGGATCAGATGCTGAAAATGTG
EST: CTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGG GCATTGCAGCTTGAAGAATTTGGAGTGGCTGGATCAGATGCTGAAAATGTG
genomic: CTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGGgtattgaaaa ... ttatgtatagGCATTGCAGCTTGAAGAATTTGGAGTGGCTGGATCAGATGCTGAAAATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTCGAGTCAAATCTGCTGATGTGAGGCGGAAGACGCTACTAACAGCAACTGGAGAAACAATAAGTTACAAGATTCTCATCATTGCAACAGGTGCTCGGgtattgaaaactgatctttcaacagtcaattaccttgtagtgcatcagataggcaagatcttttcgcttatggttaatccctataagagatatggatttt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagata