1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACGTATCGTTGGATGGCTCCAGAGgtacttaacacttaatgcttttatttattcattcatttatttttgttggtgaatggggaaggggactccagaatgctgaccattcacctttcactttgttgtag
species | Vitis vinifera |
transcript | Vv14s0066g00370.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGAGATGATGACTGCCGAAACTGGAACGTATCGTTGGATGGCTCCAGAG CTTTATAGCACAGTAACATTGAGGCATGGAGAGAAGAAGCATTACAATCACEST: gi|110426961|gb|EC993390.1|EC993390
genomic: CAGAGATGATGACTGCCGAAACTGGAACGTATCGTTGGATGGCTCCAGAGgtacttaaca ... tttgttgtagCTTTATAGCACAGTAACATTGAGGCATGGAGAGAAGAAGCATTACAATCAC
EST: CTGGAACGTATCGTTGGATGGCTCCAGAG CTTTATAGCACAGTAACATTGAGGCATGGAGAGAAGAAGCATTACAATCACEST: gi|110382036|gb|EC938309.1|EC938309
genomic: CTGGAACGTATCGTTGGATGGCTCCAGAGgtacttaaca ... tttgttgtagCTTTATAGCACAGTAACATTGAGGCATGGAGAGAAGAAGCATTACAATCAC
EST: CGAAACTGGAACGTATCGTTGGATGGCTCCAGAG CTTTATAGCACAGTAACATTGAGGCATGGAGAGAAGAAGCATTACAATCAC
genomic: CGAAACTGGAACGTATCGTTGGATGGCTCCAGAGgtacttaaca ... tttgttgtagCTTTATAGCACAGTAACATTGAGGCATGGAGAGAAGAAGCATTACAATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACGTATCGTTGGATGGCTCCAGAGgtacttaacacttaatgcttttatttattcattcatttatttttgttggtgaatggggaaggggactccagaatgctgaccattcacctttcactttgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG