1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGATACTTTGCCATCTGAGTATGATTCTCGAGTAAAGGCTATGGAGGTTGATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttcaattttgtgcatattttatggaagtggttgttgcttgtccgatttttgatactttcaactaaaacttgcctctaattacaacag
species | Vitis vinifera |
transcript | Vv14s0060g02260.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|110384620|gb|EC949072.1|EC949072
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|71859210|gb|DT008265.1|DT008265
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|110711112|gb|EE087285.1|EE087285
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|71857850|gb|DT006905.1|DT006905
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGGCA-TTGTTTTGCCCATGACACEST: gi|110718444|gb|EE095285.1|EE095285
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGG-CAATTGTTTTGCCCATGACAC
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|110685213|gb|EE063376.1|EE063376
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|71863186|gb|DT012241.1|DT012241
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|110724441|gb|EE100272.1|EE100272
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|110722856|gb|EE099502.1|EE099502
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|71861858|gb|DT010913.1|DT010913
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTEST: gi|30255105|gb|CB971552.1|CB971552
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTT
EST: ATGAAAAACCAGCAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|30252235|gb|CB969786.1|CB969786
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|110732813|gb|EE108430.1|EE108430
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAACAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|34549827|gb|CF518059.1|CF518059
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|34544589|gb|CF512821.1|CF512821
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|30252226|gb|CB969777.1|CB969777
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGGEST: gi|71879123|gb|DT028178.1|DT028178
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
EST: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAG ATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
genomic: ATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttca ... attacaacagATCCAAGAATTAGTTGAGGCAATTGTTTTGCCCATGACACATAAGGAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATACTTTGCCATCTGAGTATGATTCTCGAGTAAAGGCTATGGAGGTTGATGAAAAACCAACAGAAGACTACAATGATATCGGAGGGCTGGAGAAGCAGgcaagtttcaattttgtgcatattttatggaagtggttgttgcttgtccgatttttgatactttcaactaaaacttgcctctaattacaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC