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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgatatctaagtttaaagctatattgctattatattcatatttatgcttctttgttataggctatatttctaaaccccaagt...

Basic information

species Vitis vinifera
transcript Vv14s0060g02240.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 4
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgatatctaagtttaaa-gctatattgctattatattcatatt-tatgcttctttgt-tataggctatatttctaaaccccaagt--
||||| |||| ||||||||| ||||||||||| ||||| |||||||| || || ||||||||  | || ||||| |||||||    | ||||| |   || |  ||  ||     |||| |   | |  | | |   || |||| ||     | |||   ||  || |  | |  |    |  
GATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatg---gatttttaac--atgttaaaccttgtttactatgtgcttgtggtttgctggttgtatgtttagacatgtatgttctccatctgcataatcagccttt

upper sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgat-atctaagtttaaagctatattgctattatattcatatttatgc-ttctttgttataggctatatttctaaaccccaagt
||||| || | ||||||||| |||||||| || |||||||||||||| || |||||||||||  |||| ||||| |||||||   |  || ||  || || |    || |  |  |||| |   | ||   |   | |||||||  |  | |   |   || ||||| |   |      |
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaat--ttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgtcat

upper sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G038606_T03 (Zea mays), 5'ss of exon 3
----------------------GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgat-atctaagtttaaagctatattgctattatattcatatttatg--cttctttgttataggctatatttctaaaccccaagt
                      || || || | ||||||||| |||||||| || |||||||| ||||| || |||||||||||  |||| ||||| |||||||   |  || ||  || || | |  ||   |   |||| |   | ||   |   ||||||||  |||||   | ||    |   | ||   |   || | 
TTTATGATGGCTCGAATTGCAGGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatggat--ttcttggttaatgagcctagccaatctctatttcagttttgcttggttatttatgtgcttctccctgatttcttccttgtcattatgacatg-

upper sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G038606_T02 (Zea mays), 5'ss of exon 4
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgat-atctaagtttaaagctatattgctattatat--tcatatttatgcttctttgttataggctatatttctaaaccccaagt
|| || || | ||||||||| |||||||| || |||||||| ||||| || |||||||||||  |||| ||||| |||||||   |  || ||  || || | |  ||   |   |||| |   | ||   |  | || | | |||||||   | ||    |   | ||   |   || | 
GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatggat--ttcttggttaatgagcctagccaatctctatttcagttttgcttggttatttatgtgcttctccctgatttcttccttgtcattatgacatg-

upper sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgatatctaagtttaaagctatattgct--attatattcata-tttatgcttctttgttataggct-----------atatttctaaaccccaagt------------------------
||||||||||| |||||| | ||||| || |||||||||||||| ||||| |||||||| ||  | || ||||| ||||| | |   | |  |  |   ||| |  ||||   ||| | |   |  || |  |||| |  || |       |||  || |||           ||   | ||  | |  | |                        
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgct--tcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag

upper sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 4
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgatatctaagtttaaagctatattgctattatattcatatttatgcttctttgtt-ataggctatatttctaaaccccaagt
|| |||||||| |||||||| ||||| ||||||||||| || || |||||||| ||||| ||  |||| ||||| ||||| | | | || | |  |       | |  ||     | | |   | |||  || | |  |  |    |||||| | | |  |     |    || ||   
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattgtgtgtggtgtgctggtgacattttctttttttatttgttaattttaaaactg-gtaaatttgttgagaagaaagggagccttgccacagta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189618|gb|CF608967.1|CF608967
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGATGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|71866659|gb|DT015714.1|DT015714
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|37189144|gb|CF608493.1|CF608493
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|110368812|gb|EC932903.1|EC932903
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|71886236|gb|DT035291.1|DT035291
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|37184974|gb|CF604327.1|CF604327
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGATGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|110400007|gb|EC966544.1|EC966544
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG
EST: gi|37189131|gb|CF608480.1|CF608480
EST:     AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG                         GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG
genomic: AATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttgg ... tgtgttccagGTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG