1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacactttactacttaaacctggaaaataatgtttccatgtgattgtttgagagtacatttaaatggatatgagtattttgggtttctggtaggaggtt...
species | Vitis vinifera |
transcript | Vv14s0060g02220.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGAACTGCCATCTGCATATGTTGAGGAATTTCG ATGTGCAATGGATGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAAEST: gi|30303590|gb|CB980384.1|CB980384
genomic: GAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacacttta ... tttatggcagATGTGCAATGGACGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
EST: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG ATGTGCAATGGACGCAGAAATTCTCAAATATGCTAGTGAAGCATATCCAAAEST: gi|110386543|gb|EC951144.1|EC951144
genomic: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacacttta ... tttatggcagATGTGCAATGGACGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
EST: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG ATGTGCAATGGATGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAAEST: gi|110713063|gb|EE088666.1|EE088666
genomic: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacacttta ... tttatggcagATGTGCAATGGACGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
EST: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG ATGTGCAATGGGCGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAAEST: gi|56408576|gb|CX016828.1|CX016828
genomic: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacacttta ... tttatggcagATGTGCAATGGACGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
EST: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG ATGTGCAATGGATGCAGAAATTCTCAAATATGTTAGTGAAGCATATCC-AAEST: gi|56408380|gb|CX016632.1|CX016632
genomic: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacacttta ... tttatggcagATGTGCAATGGACGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
EST: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG ATGTGCAATGGATGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
genomic: AGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacacttta ... tttatggcagATGTGCAATGGACGCAGAAATTCTCAAATATGTTAGTGAAGCATATCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCGgtacactttactacttaaacctggaaaataatgtttccatgtgattgtttgagagtacatttaaatggatatgagtattttgggtttctggtaggaggtt
- - - - - - - - - - GCTGCT
- - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga