1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACAGTTGATCACAGGCTGGAAGAGAATGCAGAAGAAAGGGAACGTGTCACTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacatatttgatgcccatacaactcaaagctgaaagaaattttaattgattattcccttgtcttgaatcttcatgggtcaaatgtatatggtttgtag
species | Vitis vinifera |
transcript | Vv14s0060g01580.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAAGTGGGGGTGAATTTGGAAAGCTGAATGTTTTTGGGGGCAATTGAG -TTGGCCC-CTTCCGCTGEST: gi|37189043|gb|CF608392.1|CF608392
genomic: TGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAAT-GAGgtataacata ... tggtttgtagGTTGGCCCACT-CCGCTG
EST: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAG GTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATTEST: gi|110687916|gb|EE065868.1|EE065868
genomic: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacata ... tggtttgtagGTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATT
EST: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAG GTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGATCAATTEST: gi|110730227|gb|EE107063.1|EE107063
genomic: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacata ... tggtttgtagGTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATT
EST: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAG GTTGGCCCACTCCGCTGCTGGCCTGGTGGATTAEST: gi|110699523|gb|EE076606.1|EE076606
genomic: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacata ... tggtttgtagGTTGGCCCACTCCGCTGCTGGCCTGGTGGATTA
EST: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAN GNTGGCCCACTCCGCTGCCTGGC-TGGTGGATTATGTCTCTCCAGATCAATEST: gi|71890427|gb|DT039482.1|DT039482
genomic: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacata ... tggtttgtagGTTGGCCCACTCCGCTGC-TGGCCTGGTGGATTATGTCTCTCCAGGTCAAT
EST: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAG GTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATTEST: gi|254914412|gb|GR906513.1|GR906513
genomic: CTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacata ... tggtttgtagGTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATT
EST: GGAAGGCTGAATGTTTTTGGGGGCAATGAG GTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGATCAATT
genomic: GGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacata ... tggtttgtagGTTGGCCCACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGTTGATCACAGGCTGGAAGAGAATGCAGAAGAAAGGGAACGTGTCACTGCAAGTGGGGGTGAAGTTGGAAGGCTGAATGTTTTTGGGGGCAATGAGgtataacatatttgatgcccatacaactcaaagctgaaagaaattttaattgattattcccttgtcttgaatcttcatgggtcaaatgtatatggtttgtag
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