Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcctacctgctaatatagtttttagtttagtttgtctttttaattattgcatttttttttggtatgcttgtttggaatgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgta------catattttgaagaacattcctacctgctaatatagtttttagtttagtttgtcttttta-attattgcatttttttttggtatgcttgtttggaatgt--------
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ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctg-tacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 4
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcc-tacctgctaatatagtttttagtttagtttgtctttttaattattgcatttttttttggtatgcttgtttggaatgt
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TTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTCTTGGGTCTGGTAGTGATGATGTTCGTGAGCAGgtatttatttagtcttatcttttgtgctttcttattttctatttaggagtgtatga-tgtgtgacagtgccctttctctgttttaaaacaatacaaaag--
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 4
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaaca--ttcctacctgctaatatagtttttagtttagtttgtcttttta-attattgcatttttttttggtatgcttgtttggaatgt
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TTCTGGCACTTCAGAAAATACAAAGGCTGTTATTGACCATGGGGCTGTTCCTATATTTGTGAAGCTTCTTGGGTCTGGTAGTGATGATGTTCGTGAGCAGgtatttattcagtcttttggctttcttgctttttatttgctatttagg--agtgtgtgatgtgacagtaatgcattttctctgttttaaaacaattaaaag--
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 5
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcctacctgctaatatagtttttagtttagtttgtctttttaattattgcatttttttttggtatgcttgtttggaatgt---
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TTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacat---ttcatgtaccttgtcatatatttgtttatcaataaaaattatacacttaaaatgagaacaaattactttttatgttgtttgacccaaaaatgtg
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 4
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcc-tacctgctaatatagtttttagtttagtttgtctttttaattattgc--atttttttttggtatgcttgtttggaatgt
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TTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgtacatttcgtgtaccttatcatatatttgtt--tatcaataaaaattatacacattcttaaaatgagaacagattactttttatgttgtttaaccagaaaa-
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 4
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacat-at---tttgaagaacattcctacctgctaatatagtttttagtttagtttgtctttttaattattgcatttttttttggtatgcttgtttggaatgt
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TTCTGGGACGTCTGAAAACACCAAGGTTGTCATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGgtatgttattcatttttcatatattagcataccttcatctgtctatgaaatgcaagaactttgggatccagtttttttttttttgtgataatgaaattaa----
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 4
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacat-attttgaa---gaacattcctacctgctaatatagtttttagtttagtttgtc--tttttaattattgcatttttttttggtatgcttgtttggaatgt
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TTCTGGAACGTCTGAAAACACAAAGGTTGTGATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGgtatattattctttattcatatattaacataccttcatctgtctatgaaattaaaagggtagctcttgattgcaaaacacgtttgtt-catgtttattttt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359173|gb|EC920237.1|EC920237EST: CGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAG GCTGTGTGGGCCCTAGGAAATGTTGCCGGTGATTCCCCCAGATGCCGTGAT
genomic: CGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattt ... gctcatttagGCTGTGTGGGCCCTAGGAAATGTTGCCGGTGATTCCCCCAGATGCCGTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcctacctgctaatatagtttttagtttagtttgtctttttaattattgcatttttttttggtatgcttgtttggaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca