Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatcctttttcactgttatatttattgggcaaatagactttcctctatactactgcatatgtccagtcttggagattggaatcagtcctcataagtgcggtttaatgtttcag

Basic information

species Vitis vinifera
transcript Vv14s0060g01280.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692572|gb|EE071970.1|EE071970
EST:     ATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: ATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|352765297|gb|FQ465994.1|FQ465994
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|30303742|gb|CB980536.1|CB980536
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|71865313|gb|DT014368.1|DT014368
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|30299286|gb|CB976080.1|CB976080
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|71861591|gb|DT010646.1|DT010646
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|110723031|gb|EE099877.1|EE099877
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
EST: gi|161713995|gb|FC063180.1|FC063180
EST:     GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG                         TCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT
genomic: GGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAGgtgaattatc ... aatgtttcagTCCAGTGCAGGATGTGGCTGATTCTTGCAGGACTGGTGCTGCAACAAATGT