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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGACTATTAATCTTCCAACTGAAAAGCCTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttgatatttgttttctaacttataggttcttttctctgtttttacttggattgacatctgagacaagagtttgtatttgaatttcctttacaa...

Basic information

species Vitis vinifera
transcript Vv14s0060g00550.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 5'ss of exon 3
-------------------GTGAAGACTATTAATCTTCCAACTGAAAAGCCTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttgatatttgttttctaacttataggttcttttct--ctgtttttacttgg-----attgacatctgagacaagagtttg-tatttgaatt-tcctttacaa------
                   || ||||| |||  |||||| ||||| ||||| |||||||||||  |||||||||| |||||||| || |||||  ||||||| | || |  | ||    || |     || |   ||| |     || ||| | |||      | |  ||| ||  ||| |  | |  || ||||| | | | || | |      
TGAGGAGAACTGGGACAAGGTTAAGACAATTTTTCTTCCCACTGAGAAGCCAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgt-atttgtactgttaaaattatttgccattgtaccttgttcagttgatttcatttgaggagtacttccatttgtcacatgcttataataattgaactgtacatttcgacatcag

upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 5'ss of exon 3
-------------------GTGAAGACTATTAATCTTCCAACTGAAAAGCCTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtg--agttttgatatttgttttctaacttataggttcttttctctgtttttacttgg-----attgacatctgagacaagagtttg-tatttgaatt-tcctttacaa------
                   || ||||| |||  |||| | ||||| ||||| |||||||||||  |||||||||| |||||||| || |||||  |||||||    ||  || ||    || | |  |||      || ||    || ||| | |||      | |   |||||  ||| |  | |  || ||||| | | | || |        
TGAGGAGAACTGGGACAAGGTTAAGACAATTTTTCTTTCCACTGAGAAGCCAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtcctgttaaa-attatttgcctttgtacctcattcagttgatttcatttgaggagtacttctatctgtcacatgcttataataattgaactgtacatttcgtcattag

upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 3
-------------------GTGAAGACTATTAATCTTCCAACTGAAAAGCCTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttgatatttgttttctaacttataggttcttttctctgtttttacttggattgacatctgagacaagagtttgt----atttgaatttcctttacaa
                   || ||||||||   |||||| || || ||||  |||||||||||  |||||||||||||||||||||| || ||  ||||||| || | |    || |   |||   ||   |    || ||    | || | |     | |  ||| ||   |   |   |    ||  |   ||   || || 
CGAGGAGAACTGGGACAAGGTTAAGACTATCTTTCTTCCCACAGAGAAGCAAATGACACCTGACGCATGTGCTCCATTGATTGCCACCCTGCCATTGGAGgtaagctattggcttggaactctttattgctgacaattctcagattcttgattaaccatcagttctcagttgattctcattgatgatccgtgcttgaatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860005|gb|DT009060.1|DT009060
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71859655|gb|DT008710.1|DT008710
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGAC
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGAC
EST: gi|110713529|gb|EE089531.1|EE089531
EST:     TATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGNAG                         -TTCGAGGGAAAATTGGTGACTTCATAAAAGGTGCGTTTGCTGTATTTCA
genomic: TATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGG-AGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCA
EST: gi|33409351|gb|CF214978.1|CF214978
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71860180|gb|DT009235.1|DT009235
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCTCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAA
EST: gi|110724668|gb|EE100695.1|EE100695
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71859858|gb|DT008913.1|DT008913
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71862843|gb|DT011898.1|DT011898
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCT
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCT
EST: gi|351042212|gb|FQ442679.1|FQ442679
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110424854|gb|EC991228.1|EC991228
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|351036953|gb|FQ459475.1|FQ459475
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71860261|gb|DT009316.1|DT009316
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATT
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATT
EST: gi|71857295|gb|DT006350.1|DT006350
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGGGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|30256302|gb|CB972145.1|CB972145
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71857604|gb|DT006659.1|DT006659
EST:     CTATGACACCTGAGACATGAGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71862250|gb|DT011305.1|DT011305
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|33404234|gb|CF209861.1|CF209861
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|352794639|gb|FQ475137.1|FQ475137
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71864745|gb|DT013800.1|DT013800
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110712211|gb|EE089572.1|EE089572
EST:     TATGACACCTGAGACATGTGCTCCATTGATTGCCACTCNTTCCC-TGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAAGGTGTGTTTGCTGTATTTCAA
genomic: TATGACACCTGAGACATGTGCTCCATTGATTGCCACTC-TTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|156735476|gb|EV239597.1|EV239597
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71857813|gb|DT006868.1|DT006868
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAA
EST: gi|161719209|gb|FC069368.1|FC069368
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71859177|gb|DT008232.1|DT008232
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTG
EST: gi|71858239|gb|DT007294.1|DT007294
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|161716198|gb|FC065858.1|FC065858
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71862982|gb|DT012037.1|DT012037
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTAT
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTAT
EST: gi|349832974|gb|FQ416352.1|FQ416352
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110730113|gb|EE106821.1|EE106821
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|161715970|gb|FC068759.1|FC068759
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTTGCTGTATTTCA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTT-GCTGTATTTCA
EST: gi|110718171|gb|EE094700.1|EE094700
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71859365|gb|DT008420.1|DT008420
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110700143|gb|EE077843.1|EE077843
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCA-AA-GGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71871769|gb|DT020824.1|DT020824
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71856347|gb|DT005402.1|DT005402
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGG
EST: gi|161714801|gb|FC063249.1|FC063249
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|161718212|gb|FC066949.1|FC066949
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTT
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTT
EST: gi|110730321|gb|EE107269.1|EE107269
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|30301339|gb|CB978133.1|CB978133
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71860260|gb|DT009315.1|DT009315
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GGTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71855750|gb|DT004805.1|DT004805
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|294966761|gb|GW837780.1|GW837780
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|26256993|gb|CA808056.1|CA808056
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71865022|gb|DT014077.1|DT014077
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|161711977|gb|FC060844.1|FC060844
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|352785410|gb|FQ477624.1|FQ477624
EST:     TATGACACCTGAGACCTGTGCTCCATTGATTGCCACTCCTTCCC-TGGAG                         GTTCCAGGGAAAATTGGTGACTTC
genomic: TATGACACCTGAGACATGTGCTCCATTGATTGCCACTC-TTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTC
EST: gi|71863872|gb|DT012927.1|DT012927
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCAT
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCAT
EST: gi|161712114|gb|FC061486.1|FC061486
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|156735475|gb|EV239596.1|EV239596
EST:     TGACACCTGGAGACATGTGTTCCA-TGATTTGCCACTCTTCCCCCTGAAG                         GTTCGAGGGAAAATGGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCA
genomic: TGACACCT-GAGACATGTGCTCCATTGA-TTGCCACTCTT-CCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCA
EST: gi|71862021|gb|DT011076.1|DT011076
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTAT
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTAT
EST: gi|71864850|gb|DT013905.1|DT013905
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110710640|gb|EE086952.1|EE086952
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAA                         GTTCGAGGGAAAATTGGTGACTTCATAAAAGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110723142|gb|EE100116.1|EE100116
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|352786083|gb|FQ481878.1|FQ481878
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71858961|gb|DT008016.1|DT008016
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGG
EST: gi|30253098|gb|CB970649.1|CB970649
EST:     ATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGAC-TGANTAAAGGGTGTGTTTGCTGTATTTCA
genomic: ATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCA-TAAAGGGTGCGTTTGCTGTATTTCA
EST: gi|71864834|gb|DT013889.1|DT013889
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|33409787|gb|CF215414.1|CF215414
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71863671|gb|DT012726.1|DT012726
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71863081|gb|DT012136.1|DT012136
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCA
EST: gi|110724374|gb|EE100156.1|EE100156
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTTGAA                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71859656|gb|DT008711.1|DT008711
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGG
EST: gi|110712529|gb|EE090258.1|EE090258
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGNAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71862543|gb|DT011598.1|DT011598
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71860069|gb|DT009124.1|DT009124
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTC
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTC
EST: gi|37183558|gb|CF602912.1|CF602912
EST:     GCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: GCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|37188175|gb|CF607524.1|CF607524
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71858996|gb|DT008051.1|DT008051
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GGTCGAGGGAAAATTGGTGACTTCATAAAGG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGG
EST: gi|71865019|gb|DT014074.1|DT014074
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|110718559|gb|EE095528.1|EE095528
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCCGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71857137|gb|DT006192.1|DT006192
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|161713803|gb|FC063791.1|FC063791
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71864321|gb|DT013376.1|DT013376
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71863533|gb|DT012588.1|DT012588
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71857095|gb|DT006150.1|DT006150
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71860397|gb|DT009452.1|DT009452
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGG
EST: gi|352794923|gb|FQ477033.1|FQ477033
EST:     CTATGACACCTGAAACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAG
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71862352|gb|DT011407.1|DT011407
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA
EST: gi|71859756|gb|DT008811.1|DT008811
EST:     CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAG                         GTTCGAGGGAAAATTGGTGACTTCATAAAGGGGGCGTTTGCTGTATTTCAA
genomic: CTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttg ... tgttacttagGTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAAGACTATTAATCTTCCAACTGAAAAGCCTATGACACCTGAGACATGTGCTCCATTGATTGCCACTCTTCCCCTGGAGgtgagttttgatatttgttttctaacttataggttcttttctctgtttttacttggattgacatctgagacaagagtttgtatttgaatttcctttacaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaga