1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggtaaaagttctccatgtactgtgtcccatgacagattaatattatcttacaactgacattccaaccaaaatagttgttacttctgagatccca...
species | Vitis vinifera |
transcript | Vv14s0060g00230.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|30324545|gb|CD007807.1|CD007807
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|71864790|gb|DT013845.1|DT013845
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GTTGGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATEST: gi|110373337|gb|EC937563.1|EC937563
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagG----CTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTAT
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|18458238|gb|BM436516.1|BM436516
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|30327012|gb|CD010274.1|CD010274
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|30327090|gb|CD010352.1|CD010352
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|30321442|gb|CD004704.1|CD004704
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|32268077|gb|CD717236.1|CD717236
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|110696063|gb|EE074792.1|EE074792
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|161714504|gb|FC062954.1|FC062954
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAAEST: gi|30326319|gb|CD009581.1|CD009581
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
EST: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAG GCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
genomic: AGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggta ... gtgattttagGCTGCACAACTGAATTTCAGAGGACAGCGTATCTGGTCAGCTGCTATAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggtaaaagttctccatgtactgtgtcccatgacagattaatattatcttacaactgacattccaaccaaaatagttgttacttctgagatccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatag