1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTATCACCTGAAGAGCGGAATGCTAGACCAGTTCCGAAAATGGAACGGCTGTCCACTCTATACAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGgtactaaacccaaacttttaacagaaagtattagctatttagtgatgatgtgaacattgtaaacgtttttcagctcatattatttaatgatgtctttttg...
species | Vitis vinifera |
transcript | Vv14s0036g00430.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTCCACTCTATACAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAG TGGATGGTAGATGAAGAAAAACTCCGTGTTATCCACTACACACTTGGCCCCEST: gi|110721118|gb|EE097748.1|EE097748
genomic: TGTCCACTCTATACAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGgtactaaacc ... gtaaatgcagTGGATGGTAGATGAAGAAAAACTCCGTGTTATCCACTACACACTTGGCCCC
EST: TGTCCACTCTATACAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAG TGGATGGTAGATGAAGAAAAACTCCGTGTTATCCACTACACACTTGGCCCC
genomic: TGTCCACTCTATACAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGgtactaaacc ... gtaaatgcagTGGATGGTAGATGAAGAAAAACTCCGTGTTATCCACTACACACTTGGCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTATCACCTGAAGAGCGGAATGCTAGACCAGTTCCGAAAATGGAACGGCTGTCCACTCTATACAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGgtactaaacccaaacttttaacagaaagtattagctatttagtgatgatgtgaacattgtaaacgtttttcagctcatattatttaatgatgtctttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa