1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAATAAGGAGGGCTCATGCAGTTCATCCCATTACTGCCTTGCAAATGGAGTGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatattccatcctaagttctaaatctatctcttcacttagtccatccttgccttttatctgtttacatgttagtgttcatgtaacttccaaattcc...
species | Vitis vinifera |
transcript | Vv14s0030g02020.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAG AGAACTTGGAGTTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTEST: gi|110425276|gb|EC991658.1|EC991658
genomic: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatatt ... tgttttgtagAGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTT
EST: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAG AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTEST: gi|71875780|gb|DT024835.1|DT024835
genomic: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatatt ... tgttttgtagAGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTT
EST: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAG AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTEST: gi|33404078|gb|CF209705.1|CF209705
genomic: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatatt ... tgttttgtagAGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTT
EST: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAG AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGA-TCTTTEST: gi|33404158|gb|CF209785.1|CF209785
genomic: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatatt ... tgttttgtagAGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGT-TTT
EST: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAG AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTT
genomic: TGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatatt ... tgttttgtagAGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAAGGAGGGCTCATGCAGTTCATCCCATTACTGCCTTGCAAATGGAGTGGTCCCTCTGGACCCGCGATATTGAGGAAGAAATAGTCCCTCTTTGCAGgtttcatattccatcctaagttctaaatctatctcttcacttagtccatccttgccttttatctgtttacatgttagtgttcatgtaacttccaaattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA